{
    "type": "genome",
    "identifier": "GCF_014117265.1",
    "organism": "Corynebacterium hindlerae",
    "title": "Corynebacterium hindlerae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Microbiology Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014117265.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15369467",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "699041",
        "species_taxid": "699041",
        "organism_name": "Corynebacterium hindlerae",
        "infraspecific_name": "strain=NML 93-0612",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/09",
        "asm_name": "ASM1411726v1",
        "asm_submitter": "National Microbiology Laboratory",
        "gbrs_paired_asm": "GCA_014117265.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/117/265/GCF_014117265.1_ASM1411726v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2682244",
        "genome_size_ungapped": "2682044",
        "gc_percent": "59.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014117265.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "2606",
        "protein_coding_gene_count": "2500",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-09",
    "dateModified": "2020-08-09",
    "datePublished": "2020-08-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium hindlerae"
        ],
        "sample_taxid": [
            "699041"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: QC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.762 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2682044",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2680594",
        "N50 (bp)": "2680594",
        "Gap Ratio (%)": "0.000037",
        "GCcontent (%)": "58.8",
        "Number of CDSs": "2595",
        "Average Protein Length": "308.2",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "12",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Corynebacterium hindlerae",
                "strain": "strain=NML 93-0612",
                "accession": "GCA_014117265.1",
                "taxid": 699041,
                "species_taxid": 699041,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 891,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium kalinowskii",
                "strain": "strain=1959",
                "accession": "GCA_009734385.1",
                "taxid": 2675216,
                "species_taxid": 2675216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9994,
                "matched_fragments": 377,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium epidermidicanis",
                "strain": "strain=DSM 45586",
                "accession": "GCA_001021025.1",
                "taxid": 1050174,
                "species_taxid": 1050174,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2637,
                "matched_fragments": 275,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium renale",
                "strain": "strain=NCTC7448",
                "accession": "GCA_900478035.1",
                "taxid": 1724,
                "species_taxid": 1724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7837,
                "matched_fragments": 110,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium vitaeruminis",
                "strain": "strain=DSM 20294",
                "accession": "GCA_000550805.1",
                "taxid": 38305,
                "species_taxid": 38305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5419,
                "matched_fragments": 215,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium aquilae",
                "strain": "strain=S-613",
                "accession": "GCA_001941445.1",
                "taxid": 203263,
                "species_taxid": 203263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4488,
                "matched_fragments": 176,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium ureicelerivorans",
                "strain": "strain=IMMIB RIV-2301",
                "accession": "GCA_000747315.1",
                "taxid": 401472,
                "species_taxid": 401472,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8448,
                "matched_fragments": 117,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium pollutisoli",
                "strain": "strain=VDS11",
                "accession": "GCA_900177745.1",
                "taxid": 1610489,
                "species_taxid": 1610489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8117,
                "matched_fragments": 204,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium efficiens",
                "strain": "strain=YS-314",
                "accession": "GCA_000160795.1",
                "taxid": 152794,
                "species_taxid": 152794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7246,
                "matched_fragments": 188,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia spumicola",
                "strain": "strain=NBRC 107696",
                "accession": "GCA_009932475.1",
                "taxid": 589161,
                "species_taxid": 589161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6729,
                "matched_fragments": 72,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium sanguinis",
                "strain": "strain=CCUG 58655",
                "accession": "GCA_007641235.1",
                "taxid": 2594913,
                "species_taxid": 2594913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.57,
                "matched_fragments": 136,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium lipophiloflavum",
                "strain": "strain=DSM 44291",
                "accession": "GCA_000159635.1",
                "taxid": 161889,
                "species_taxid": 161889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3504,
                "matched_fragments": 123,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium appendicis",
                "strain": "strain=DSM 44531",
                "accession": "GCA_900156665.1",
                "taxid": 163202,
                "species_taxid": 163202,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1621,
                "matched_fragments": 127,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium afermentans subsp. lipophilum",
                "strain": "strain=CCUG 32105",
                "accession": "GCA_015351335.1",
                "taxid": 144184,
                "species_taxid": 38286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1547,
                "matched_fragments": 144,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium mucifaciens",
                "strain": "strain=ATCC 700355",
                "accession": "GCA_012396315.1",
                "taxid": 57171,
                "species_taxid": 57171,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1388,
                "matched_fragments": 117,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus oxybenzonivorans",
                "strain": "strain=S2-17",
                "accession": "GCA_003130705.1",
                "taxid": 1990687,
                "species_taxid": 1990687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5889,
                "matched_fragments": 75,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014117265.1",
                "gtdb_species": "s__Corynebacterium sp014117265",
                "ani": 100.0,
                "matched_fragments": 891,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.31",
                "min_intra_species_ani": "97.31",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009734385.1",
                "gtdb_species": "s__Corynebacterium sp009734385",
                "ani": 80.0289,
                "matched_fragments": 375,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001021025.1",
                "gtdb_species": "s__Corynebacterium epidermidicanis",
                "ani": 79.3034,
                "matched_fragments": 276,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002563965.1",
                "gtdb_species": "s__Corynebacterium renale",
                "ani": 78.7567,
                "matched_fragments": 110,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000550805.1",
                "gtdb_species": "s__Corynebacterium vitaeruminis",
                "ani": 78.6201,
                "matched_fragments": 216,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001941445.1",
                "gtdb_species": "s__Corynebacterium aquilae",
                "ani": 78.4262,
                "matched_fragments": 176,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000011305.1",
                "gtdb_species": "s__Corynebacterium efficiens",
                "ani": 78.078,
                "matched_fragments": 185,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900177745.1",
                "gtdb_species": "s__Corynebacterium pollutisoli",
                "ani": 77.8446,
                "matched_fragments": 202,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007641235.1",
                "gtdb_species": "s__Corynebacterium sanguinis",
                "ani": 77.5906,
                "matched_fragments": 137,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_009932475.1",
                "gtdb_species": "s__Gordonia spumicola",
                "ani": 77.438,
                "matched_fragments": 72,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019209935.1",
                "gtdb_species": "s__Corynebacterium sp019209935",
                "ani": 77.3532,
                "matched_fragments": 145,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.84",
                "min_intra_species_ani": "95.84",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012838985.1",
                "gtdb_species": "s__Corynebacterium sp012838985",
                "ani": 77.2179,
                "matched_fragments": 160,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156665.1",
                "gtdb_species": "s__Corynebacterium appendicis",
                "ani": 77.1621,
                "matched_fragments": 127,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012396315.1",
                "gtdb_species": "s__Corynebacterium mucifaciens",
                "ani": 77.1388,
                "matched_fragments": 117,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.74",
                "min_intra_species_ani": "95.74",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001807265.1",
                "gtdb_species": "s__Corynebacterium sp001807265",
                "ani": 77.1191,
                "matched_fragments": 136,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003130705.1",
                "gtdb_species": "s__Rhodococcus sp003130705",
                "ani": 76.4212,
                "matched_fragments": 73,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.82",
                "min_intra_species_ani": "95.95",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
        "doubling_h": -0.089,
        "growth_tmp": 35.111,
        "optimum_tmp": 35.173,
        "optimum_ph": 7.292,
        "genome_size": 2639223.511,
        "gc_content": 59.791,
        "coding_genes": 2390.094,
        "rRNA16S_genes": 4.282,
        "tRNA_genes": 52.979,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.75,
        "facultative_respiration": 0.231,
        "anaerobic_respiration": 0.063,
        "aerobic_respiration": 0.705,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.985,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.014,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Corynebacterium",
        "hindlerae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}