{ "type": "genome", "identifier": "GCF_014117325.1", "organism": "Spirosoma foliorum", "title": "Spirosoma foliorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience & Biotechnology (KRIBB)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014117325.1", "bioproject": "PRJNA224116", "biosample": "SAMN15655522", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2710596", "species_taxid": "2710596", "organism_name": "Spirosoma foliorum", "infraspecific_name": "strain=KCTC 72228", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/09", "asm_name": "ASM1411732v1", "asm_submitter": "Korea Research Institute of Bioscience & Biotechnology (KRIBB)", "gbrs_paired_asm": "GCA_014117325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/117/325/GCF_014117325.1_ASM1411732v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8853064", "genome_size_ungapped": "8853064", "gc_percent": "46.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014117325.1-RS_2024_09_13", "annotation_date": "2024-09-13", "total_gene_count": "7507", "protein_coding_gene_count": "7348", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-09", "dateModified": "2020-08-09", "datePublished": "2020-08-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma foliorum" ], "sample_taxid": [ "2710596" ], "sample_host_organism": [ "leaves" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeongeup city" ], "sample_host_location_id": [], "data_size": "2.524 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8853064", "Number of Sequences": "1", "Longest Sequences (bp)": "8853064", "N50 (bp)": "8853064", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.7", "Number of CDSs": "7336", "Average Protein Length": "346.0", "Coding Ratio (%)": "86.0", "Number of rRNAs": "6", "Number of tRNAs": "43", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 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77.9328, "matched_fragments": 697, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endophyticum", "strain": "strain=DSM 26130", "accession": "GCA_900112365.1", "taxid": 662367, "species_taxid": 662367, "relation_to_type": "type", "validated": true, "ani": 77.876, "matched_fragments": 770, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 77.8227, "matched_fragments": 638, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 77.8078, "matched_fragments": 724, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aerolatum", "strain": "strain=KACC 17939", "accession": "GCA_002056795.1", "taxid": 1211326, "species_taxid": 1211326, "relation_to_type": "type", "validated": true, "ani": 77.7772, "matched_fragments": 768, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 77.7164, "matched_fragments": 592, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.6061, "matched_fragments": 646, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma profusum", "strain": "strain=BT702", "accession": "GCA_014699005.1", "taxid": 2771354, "species_taxid": 2771354, "relation_to_type": "type", "validated": true, "ani": 77.568, "matched_fragments": 616, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 77.5464, "matched_fragments": 524, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma luteum", "strain": "strain=DSM 19990", "accession": "GCA_000374065.1", "taxid": 431553, "species_taxid": 431553, "relation_to_type": "type", "validated": true, "ani": 77.424, "matched_fragments": 509, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma spitsbergense", "strain": "strain=DSM 19989", 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2817060, "relation_to_type": "type", "validated": true, "ani": 75.917, "matched_fragments": 131, "total_fragments": 2951, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014117325.1", "gtdb_species": "s__Spirosoma sp014117325", "ani": 100.0, "matched_fragments": 2945, "total_fragments": 2951, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009754945.1", "gtdb_species": "s__Spirosoma sp009754945", "ani": 81.597, "matched_fragments": 1742, "total_fragments": 2951, "gtdb_taxonomy": 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