{
    "type": "genome",
    "identifier": "GCF_014137995.1",
    "organism": "Promicromonospora sukumoe",
    "title": "Promicromonospora sukumoe",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014137995.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12024883",
        "wgs_master": "JACGWV000000000.1",
        "refseq_category": "reference genome",
        "taxid": "88382",
        "species_taxid": "88382",
        "organism_name": "Promicromonospora sukumoe",
        "infraspecific_name": "strain=DSM 44121",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/10",
        "asm_name": "ASM1413799v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_014137995.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/137/995/GCF_014137995.1_ASM1413799v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6512079",
        "genome_size_ungapped": "6512079",
        "gc_percent": "72.500000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014137995.1-RS_2024_09_29",
        "annotation_date": "2024-09-29",
        "total_gene_count": "5760",
        "protein_coding_gene_count": "5662",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-10",
    "dateModified": "2020-08-10",
    "datePublished": "2020-08-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Promicromonospora sukumoe"
        ],
        "sample_taxid": [
            "88382"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.719 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6512079",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "3881295",
        "N50 (bp)": "3881295",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.5",
        "Number of CDSs": "5774",
        "Average Protein Length": "341.6",
        "Coding Ratio (%)": "90.9",
        "Number of rRNAs": "9",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Promicromonospora sukumoe",
                "strain": "strain=DSM 44121",
                "accession": "GCA_014137995.1",
                "taxid": 88382,
                "species_taxid": 88382,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2165,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Promicromonospora kroppenstedtii",
                "strain": "strain=DSM 19349",
                "accession": "GCA_000515355.1",
                "taxid": 440482,
                "species_taxid": 440482,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5341,
                "matched_fragments": 1434,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Promicromonospora soli",
                "strain": "strain=CGMCC 4.7398",
                "accession": "GCA_014653785.1",
                "taxid": 2035533,
                "species_taxid": 2035533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6245,
                "matched_fragments": 1295,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Promicromonospora umidemergens",
                "strain": "strain=DSM 22081",
                "accession": "GCA_024171995.1",
                "taxid": 629679,
                "species_taxid": 629679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4047,
                "matched_fragments": 1416,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Promicromonospora citrea",
                "strain": "strain=ATCC 15908",
                "accession": "GCA_013004695.1",
                "taxid": 43677,
                "species_taxid": 43677,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1305,
                "matched_fragments": 1206,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Promicromonospora citrea",
                "strain": "strain=JCM 3051",
                "accession": "GCA_014647735.1",
                "taxid": 43677,
                "species_taxid": 43677,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0411,
                "matched_fragments": 1311,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Myceligenerans xiligouense",
                "strain": "strain=DSM 15700",
                "accession": "GCA_003814695.1",
                "taxid": 253184,
                "species_taxid": 253184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3195,
                "matched_fragments": 867,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulosimicrobium funkei",
                "strain": "strain=NBRC 104118",
                "accession": "GCA_001570825.1",
                "taxid": 264251,
                "species_taxid": 264251,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.0756,
                "matched_fragments": 794,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3017,
                "matched_fragments": 627,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas avistercoris",
                "strain": "strain=Sa3CUA2",
                "accession": "GCA_014836445.1",
                "taxid": 2762242,
                "species_taxid": 2762242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7664,
                "matched_fragments": 655,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinotalea subterranea",
                "strain": "strain=HO-Ch2",
                "accession": "GCA_008364845.1",
                "taxid": 2607497,
                "species_taxid": 2607497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6876,
                "matched_fragments": 573,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinotalea solisilvae",
                "strain": "strain=KACC 19191",
                "accession": "GCA_016464425.1",
                "taxid": 2072922,
                "species_taxid": 2072922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5442,
                "matched_fragments": 689,
                "total_fragments": 2167,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014137995.1",
                "gtdb_species": "s__Promicromonospora sukumoe",
                "ani": 100.0,
                "matched_fragments": 2164,
                "total_fragments": 2167,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000385135.1",
                "gtdb_species": "s__Promicromonospora sukumoe_B",
                "ani": 90.495,
                "matched_fragments": 1746,
                "total_fragments": 2167,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.99",
                "min_intra_species_ani": "95.99",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000515355.1",
                "gtdb_species": "s__Promicromonospora kroppenstedtii",
                "ani": 89.5195,
                "matched_fragments": 1435,
                "total_fragments": 2167,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.09",
                "min_intra_species_ani": "97.09",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003058225.1",
                "gtdb_species": "s__Promicromonospora sp003058225",
                "ani": 87.3362,
                "matched_fragments": 1539,
                "total_fragments": 2167,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "98.27",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003550025.1",
                "gtdb_species": "s__Promicromonospora thailandica",
                "ani": 87.1401,
                "matched_fragments": 1547,
                "total_fragments": 2167,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014653785.1",
                "gtdb_species": "s__Promicromonospora soli",
                "ani": 86.611,
                "matched_fragments": 1297,
                "total_fragments": 2167,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900608595.1",
                "gtdb_species": "s__Promicromonospora panici",
                "ani": 86.127,
                "matched_fragments": 1421,
                "total_fragments": 2167,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003096495.1",
                "gtdb_species": "s__Promicromonospora sukumoe_A",
                "ani": 86.0984,
                "matched_fragments": 1450,
                "total_fragments": 2167,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009708005.2",
                "gtdb_species": "s__Cellulosimicrobium sp009708005",
                "ani": 79.3018,
                "matched_fragments": 817,
                "total_fragments": 2167,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001019615.1",
                "gtdb_species": "s__Cellulosimicrobium cellulans_E",
                "ani": 79.2843,
                "matched_fragments": 818,
                "total_fragments": 2167,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "98.58",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.449,
        "cell_length": -0.222,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 27.833,
        "optimum_ph": null,
        "genome_size": 6110335.5,
        "gc_content": 71.8,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.5,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.5,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Promicromonospora",
        "sukumoe"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}