{ "type": "genome", "identifier": "GCF_014138045.1", "organism": "Nocardioides ginsengisegetis", "title": "Nocardioides ginsengisegetis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014138045.1", "bioproject": "PRJNA224116", "biosample": "SAMN11512946", "wgs_master": "JACGXA000000000.1", "refseq_category": "reference genome", "taxid": "661491", "species_taxid": "661491", "organism_name": "Nocardioides ginsengisegetis", "infraspecific_name": "strain=DSM 21349", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/10", "asm_name": "ASM1413804v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014138045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/138/045/GCF_014138045.1_ASM1413804v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4460265", "genome_size_ungapped": "4460265", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014138045.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4366", "protein_coding_gene_count": "4302", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-10", "dateModified": "2020-08-10", "datePublished": "2020-08-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides ginsengisegetis" ], "sample_taxid": [ "661491" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.180 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4460265", "Number of Sequences": "6", "Longest Sequences (bp)": "3991344", "N50 (bp)": "3991344", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.4", "Number of CDSs": "4384", "Average Protein Length": "315.4", "Coding Ratio (%)": "93.0", "Number of rRNAs": "6", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1479, 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16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 82.3127, "matched_fragments": 807, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides euryhalodurans", "strain": "strain=MMS17-SY117", "accession": "GCA_004564375.1", "taxid": 2518370, "species_taxid": 2518370, "relation_to_type": "type", "validated": true, "ani": 81.8434, "matched_fragments": 737, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 81.8432, "matched_fragments": 740, "total_fragments": 1484, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides currus", "strain": "strain=IB-3", "accession": "GCA_003057875.1", 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