{ "type": "genome", "identifier": "GCF_014138385.1", "organism": "Fontibacillus solani", "title": "Fontibacillus solani", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014138385.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025128", "wgs_master": "JACJIP000000000.1", "refseq_category": "reference genome", "taxid": "1572857", "species_taxid": "1572857", "organism_name": "Fontibacillus solani", "infraspecific_name": "strain=CECT 8693", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/10", "asm_name": "ASM1413838v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014138385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/138/385/GCF_014138385.1_ASM1413838v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5539036", "genome_size_ungapped": "5538651", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "90", "contig_count": "90", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014138385.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "5291", "protein_coding_gene_count": "5087", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-10", "dateModified": "2020-08-10", "datePublished": "2020-08-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Fontibacillus solani" ], "sample_taxid": [ "1572857" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.585 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5539036", "Number of Sequences": "90", "Longest Sequences (bp)": "417832", "N50 (bp)": "120725", "Gap Ratio (%)": "0.006951", "GCcontent (%)": "42.7", "Number of CDSs": "5177", "Average Protein Length": "302.2", "Coding Ratio (%)": "84.7", "Number of rRNAs": "3", "Number of tRNAs": "71", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fontibacillus solani", "strain": "strain=CECT 8693", "accession": "GCA_014138385.1", "taxid": 1572857, "species_taxid": 1572857, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1798, "total_fragments": 1800, 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"below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 78.1274, "matched_fragments": 240, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus bouchesdurhonensis", "strain": "strain=Marseille-P3071", "accession": "GCA_900155685.1", "taxid": 1870990, "species_taxid": 1870990, "relation_to_type": "type", "validated": true, "ani": 78.1027, "matched_fragments": 269, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus fonticola", "strain": "strain=DSM 21315", "accession": "GCA_000381905.1", "taxid": 379896, "species_taxid": 379896, "relation_to_type": "type", "validated": true, "ani": 78.1001, "matched_fragments": 267, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rubinfantis", "strain": "strain=MT18", "accession": "GCA_001486505.1", "taxid": 1720296, "species_taxid": 1720296, "relation_to_type": "type", "validated": true, "ani": 78.082, "matched_fragments": 236, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus senegalimassiliensis", "strain": "strain=SIT18", "accession": "GCA_001486585.1", "taxid": 1737426, "species_taxid": 1737426, "relation_to_type": "type", "validated": true, "ani": 78.0526, "matched_fragments": 238, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lentus", "strain": "strain=DSM 25539", "accession": "GCA_003931855.1", "taxid": 1338368, "species_taxid": 1338368, "relation_to_type": "type", "validated": true, "ani": 77.9792, "matched_fragments": 279, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus aceti", "strain": "strain=L14", "accession": "GCA_003614185.1", "taxid": 1820010, "species_taxid": 1820010, "relation_to_type": "type", "validated": true, "ani": 77.9122, "matched_fragments": 274, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus aceti", "strain": "strain=CGMCC 1.15420", "accession": "GCA_014642755.1", "taxid": 1820010, "species_taxid": 1820010, "relation_to_type": "type", "validated": true, "ani": 77.8796, "matched_fragments": 267, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus brevis", "strain": "strain=MSJ-6", "accession": "GCA_018919145.1", "taxid": 2841508, "species_taxid": 2841508, "relation_to_type": "type", "validated": true, "ani": 77.8121, "matched_fragments": 256, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sanguinis", "strain": "strain=DSM 16941", "accession": "GCA_000374825.1", "taxid": 225906, "species_taxid": 225906, "relation_to_type": "type", "validated": true, "ani": 77.7659, "matched_fragments": 230, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 77.6803, "matched_fragments": 281, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=NBRC 15307", "accession": "GCA_004000965.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 77.5062, "matched_fragments": 272, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus zeisoli", "strain": "strain=3-5-3", "accession": "GCA_003994465.1", "taxid": 2496267, "species_taxid": 2496267, "relation_to_type": "type", "validated": true, "ani": 77.4132, "matched_fragments": 161, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sophorae", "strain": "strain=CGMCC 1.10238", "accession": "GCA_900110315.1", "taxid": 1333845, "species_taxid": 1333845, "relation_to_type": "type", "validated": true, "ani": 77.0571, "matched_fragments": 109, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus doosanensis", "strain": "strain=CAU 1055", "accession": "GCA_025060755.1", "taxid": 1229154, "species_taxid": 1229154, "relation_to_type": "type", "validated": true, "ani": 76.9864, "matched_fragments": 71, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus forsythiae", "strain": "strain=T98", "accession": "GCA_000520735.1", "taxid": 365616, "species_taxid": 365616, "relation_to_type": "type", "validated": true, 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