{ "type": "genome", "identifier": "GCF_014138495.1", "organism": "Flavobacterium gossypii", "title": "Flavobacterium gossypii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014138495.1", "bioproject": "PRJNA224116", "biosample": "SAMN13173219", "wgs_master": "JACJIS000000000.1", "refseq_category": "reference genome", "taxid": "1646119", "species_taxid": "1646119", "organism_name": "Flavobacterium gossypii", "infraspecific_name": "strain=DSM 100397", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/10", "asm_name": "ASM1413849v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014138495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/138/495/GCF_014138495.1_ASM1413849v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3804645", "genome_size_ungapped": "3804456", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014138495.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3427", "protein_coding_gene_count": "3355", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-10", "dateModified": "2020-08-10", "datePublished": "2020-08-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium gossypii" ], "sample_taxid": [ "1646119" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.072 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3804645", "Number of Sequences": "9", "Longest Sequences (bp)": "2203516", "N50 (bp)": "2203516", "Gap Ratio (%)": "0.004968", "GCcontent (%)": "38.9", "Number of CDSs": "3338", "Average Protein Length": "339.1", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium gossypii", "strain": "strain=DSM 100397", "accession": "GCA_014138495.1", "taxid": 1646119, "species_taxid": 1646119, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1264, "total_fragments": 1264, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Flavobacterium endophyticum", "strain": "strain=DSM 29537", "accession": "GCA_003634455.1", "taxid": 1540163, "species_taxid": 1540163, "relation_to_type": "type", "validated": true, "ani": 97.1937, "matched_fragments": 1172, "total_fragments": 1264, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Flavobacterium microcysteis", "strain": "strain=MaA-Y11", "accession": "GCA_006385255.1", "taxid": 2596891, "species_taxid": 2596891, "relation_to_type": "type", "validated": true, "ani": 81.8067, "matched_fragments": 834, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lindanitolerans", "strain": "strain=IP-10", "accession": "GCA_002846575.1", "taxid": 428988, "species_taxid": 428988, "relation_to_type": "type", "validated": true, "ani": 81.5596, "matched_fragments": 820, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lindanitolerans", "strain": "strain=DSM 21886", "accession": "GCA_003663835.1", "taxid": 428988, "species_taxid": 428988, "relation_to_type": "type", "validated": true, "ani": 81.5554, "matched_fragments": 833, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macacae", "strain": "strain=YIM 102600", "accession": "GCA_003865365.1", "taxid": 2488993, "species_taxid": 2488993, "relation_to_type": "type", "validated": true, "ani": 79.8977, "matched_fragments": 484, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 78.0023, "matched_fragments": 156, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 77.8786, "matched_fragments": 202, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.6208, "matched_fragments": 136, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 77.6119, "matched_fragments": 188, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 77.3539, "matched_fragments": 95, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003634455.1", "gtdb_species": "s__Flavobacterium endophyticum", "ani": 97.1937, "matched_fragments": 1172, "total_fragments": 1264, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.19", "min_intra_species_ani": "97.19", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_006385255.1", "gtdb_species": "s__Flavobacterium microcysteis", "ani": 81.8005, "matched_fragments": 835, 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0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "gossypii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }