{
    "type": "genome",
    "identifier": "GCF_014138555.1",
    "organism": "Sphingobacterium cellulitidis",
    "title": "Sphingobacterium cellulitidis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014138555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14908381",
        "wgs_master": "JACJHW000000000.1",
        "refseq_category": "na",
        "taxid": "1768011",
        "species_taxid": "1768011",
        "organism_name": "Sphingobacterium cellulitidis",
        "infraspecific_name": "strain=DSM 101679",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/10",
        "asm_name": "ASM1413855v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_014138555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/138/555/GCF_014138555.1_ASM1413855v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4433818",
        "genome_size_ungapped": "4433434",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "20",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014138555.1-RS_2024_12_26",
        "annotation_date": "2024-12-26",
        "total_gene_count": "3813",
        "protein_coding_gene_count": "3745",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-10",
    "dateModified": "2020-08-10",
    "datePublished": "2020-08-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingobacterium cellulitidis"
        ],
        "sample_taxid": [
            "1768011"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.253 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4433818",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "1118841",
        "N50 (bp)": "739568",
        "Gap Ratio (%)": "0.008661",
        "GCcontent (%)": "37.2",
        "Number of CDSs": "3711",
        "Average Protein Length": "347.7",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Sphingobacterium soli",
                "strain": "strain=DSM 101679",
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                "taxid": 1914757,
                "species_taxid": 1914757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 1468,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingobacterium soli",
                "strain": "strain=CGMCC 1.15966",
                "accession": "GCA_014644335.1",
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                "species_taxid": 1914757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.998,
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                "total_fragments": 1468,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingobacterium mizutaii",
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                "accession": "GCA_900187125.1",
                "taxid": 1010,
                "species_taxid": 1010,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium mizutaii",
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                "accession": "GCA_900102835.1",
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                "species_taxid": 1010,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 870,
                "total_fragments": 1468,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium mizutaii",
                "strain": "strain=NBRC 14946",
                "accession": "GCA_007990895.1",
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                "species_taxid": 1010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3419,
                "matched_fragments": 859,
                "total_fragments": 1468,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002245855.1",
                "gtdb_species": "s__Sphingobacterium cellulitidis",
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                "matched_fragments": 1321,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.02",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900187125.1",
                "gtdb_species": "s__Sphingobacterium mizutaii",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.36",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014219015.1",
                "gtdb_species": "s__Sphingobacterium sp002476975",
                "ani": 81.9786,
                "matched_fragments": 854,
                "total_fragments": 1468,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "97.88",
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                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_009733535.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_901472535.1",
                "gtdb_species": "s__Sphingobacterium daejeonense",
                "ani": 80.6244,
                "matched_fragments": 675,
                "total_fragments": 1468,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium",
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                "mean_intra_species_ani": "97.25",
                "min_intra_species_ani": "97.25",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_011046555.1",
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                "mean_intra_species_ani": "100.00",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_011043515.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            },
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.219,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}