{ "type": "genome", "identifier": "GCF_014138665.1", "organism": "Actinomadura namibiensis", "title": "Actinomadura namibiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014138665.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908517", "wgs_master": "JACJIA000000000.1", "refseq_category": "reference genome", "taxid": "182080", "species_taxid": "182080", "organism_name": "Actinomadura namibiensis", "infraspecific_name": "strain=DSM 44197", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/10", "asm_name": "ASM1413866v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014138665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/138/665/GCF_014138665.1_ASM1413866v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9760791", "genome_size_ungapped": "9760388", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014138665.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "9400", "protein_coding_gene_count": "9200", "non_coding_gene_count": "97", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-10", "dateModified": "2020-08-10", "datePublished": "2020-08-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura namibiensis" ], "sample_taxid": [ "182080" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa" ], "sample_host_location_id": [], "data_size": "2.576 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.07, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9760791", "Number of Sequences": "34", "Longest Sequences (bp)": "1488020", "N50 (bp)": "507078", "Gap Ratio (%)": "0.004129", "GCcontent (%)": "73.4", "Number of CDSs": "9480", "Average Protein Length": "307.1", "Coding Ratio (%)": "89.5", "Number of rRNAs": "2", "Number of tRNAs": "138", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura namibiensis", "strain": "strain=DSM 44197", "accession": "GCA_014138665.1", "taxid": 182080, "species_taxid": 182080, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3233, 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