{
    "type": "genome",
    "identifier": "GCF_014144965.1",
    "organism": "Dietzia kunjamensis",
    "title": "Dietzia kunjamensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Peking University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014144965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14141882",
        "wgs_master": "JAALDS000000000.1",
        "refseq_category": "na",
        "taxid": "322509",
        "species_taxid": "322509",
        "organism_name": "Dietzia kunjamensis",
        "infraspecific_name": "strain=K30-10T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/10",
        "asm_name": "ASM1414496v1",
        "asm_submitter": "Peking University",
        "gbrs_paired_asm": "GCA_014144965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/144/965/GCF_014144965.1_ASM1414496v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3027918",
        "genome_size_ungapped": "3027918",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "466",
        "contig_count": "466",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014144965.1-RS_2024_04_04",
        "annotation_date": "2024-04-04",
        "total_gene_count": "3153",
        "protein_coding_gene_count": "2912",
        "non_coding_gene_count": "51",
        "pubmed_id": "32715552"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-10",
    "dateModified": "2020-08-10",
    "datePublished": "2020-08-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dietzia kunjamensis"
        ],
        "sample_taxid": [
            "322509"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India"
        ],
        "sample_host_location_id": [],
        "data_size": "0.830 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3027918",
        "Number of Sequences": "466",
        "Longest Sequences (bp)": "52441",
        "N50 (bp)": "9921",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.9",
        "Number of CDSs": "2527",
        "Average Protein Length": "307.1",
        "Coding Ratio (%)": "76.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Dietzia kunjamensis",
                "strain": "strain=K30-10T",
                "accession": "GCA_014144965.1",
                "taxid": 322509,
                "species_taxid": 322509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 761,
                "total_fragments": 775,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia kunjamensis",
                "strain": "strain=DSM 44907",
                "accession": "GCA_003610395.1",
                "taxid": 322509,
                "species_taxid": 322509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9937,
                "matched_fragments": 774,
                "total_fragments": 775,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia kunjamensis subsp. schimae",
                "strain": "strain=DSM 45139",
                "accession": "GCA_900182685.1",
                "taxid": 498198,
                "species_taxid": 322509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.0118,
                "matched_fragments": 714,
                "total_fragments": 775,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia maris",
                "strain": "strain=IMV 195",
                "accession": "GCA_009806365.1",
                "taxid": 37915,
                "species_taxid": 37915,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.9288,
                "matched_fragments": 591,
                "total_fragments": 775,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia maris",
                "strain": "strain=IMV 195T",
                "accession": "GCA_014144855.1",
                "taxid": 37915,
                "species_taxid": 37915,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.9127,
                "matched_fragments": 577,
                "total_fragments": 775,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Dietzia kunjamensis subsp. schimae",
                "strain": "strain=YIM 65001T",
                "accession": "GCA_014144975.1",
                "taxid": 498198,
                "species_taxid": 322509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.235,
                "matched_fragments": 513,
                "total_fragments": 775,
                "ani_threshold": 95,
                "status": "inconclusive"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014144855.1",
                "gtdb_species": "s__Dietzia maris",
                "ani": 96.9127,
                "matched_fragments": 577,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.49",
                "min_intra_species_ani": "96.42",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000186325.1",
                "gtdb_species": "s__Dietzia cinnamea_A",
                "ani": 87.2126,
                "matched_fragments": 597,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.1735,
                "mean_intra_species_ani": "96.59",
                "min_intra_species_ani": "96.10",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001571065.1",
                "gtdb_species": "s__Dietzia cinnamea",
                "ani": 86.3604,
                "matched_fragments": 612,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.1735,
                "mean_intra_species_ani": "97.27",
                "min_intra_species_ani": "96.55",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_003096075.1",
                "gtdb_species": "s__Dietzia lutea",
                "ani": 86.1423,
                "matched_fragments": 641,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008369165.1",
                "gtdb_species": "s__Dietzia sp008369165",
                "ani": 86.0958,
                "matched_fragments": 604,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014145145.1",
                "gtdb_species": "s__Dietzia cercidiphylli",
                "ani": 84.4791,
                "matched_fragments": 512,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.02",
                "min_intra_species_ani": "96.60",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_002289575.1",
                "gtdb_species": "s__Dietzia natronolimnaea_A",
                "ani": 83.7403,
                "matched_fragments": 600,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.66",
                "min_intra_species_ani": "96.66",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.041,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 25.0,
        "optimum_ph": 7.333,
        "genome_size": 3544285.0,
        "gc_content": 69.563,
        "coding_genes": 3361.166,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 48.333,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Dietzia",
        "kunjamensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}