{
    "type": "genome",
    "identifier": "GCF_014164785.1",
    "organism": "Aquipseudomonas guryensis",
    "title": "Aquipseudomonas guryensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chungnam National University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014164785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15656869",
        "wgs_master": "JACJFN000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2759165",
        "species_taxid": "2759165",
        "organism_name": "Aquipseudomonas guryensis",
        "infraspecific_name": "strain=SR9",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/11",
        "asm_name": "ASM1416478v1",
        "asm_submitter": "Chungnam National University",
        "gbrs_paired_asm": "GCA_014164785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/164/785/GCF_014164785.1_ASM1416478v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4292038",
        "genome_size_ungapped": "4291943",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "7",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014164785.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4007",
        "protein_coding_gene_count": "3931",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-11",
    "dateModified": "2020-08-11",
    "datePublished": "2020-08-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aquipseudomonas guryensis"
        ],
        "sample_taxid": [
            "2759165"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Gurye-gun"
        ],
        "sample_host_location_id": [],
        "data_size": "1.187 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4292038",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "1684763",
        "N50 (bp)": "859627",
        "Gap Ratio (%)": "0.002213",
        "GCcontent (%)": "63.3",
        "Number of CDSs": "3976",
        "Average Protein Length": "323.6",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudomonas guryensis",
                "strain": "strain=SR9",
                "accession": "GCA_014164785.1",
                "taxid": 2759165,
                "species_taxid": 2759165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1426,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas campi",
                "strain": "strain=S1-A32-2",
                "accession": "GCA_013200955.2",
                "taxid": 2731681,
                "species_taxid": 2731681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2745,
                "matched_fragments": 1269,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas ullengensis",
                "strain": "strain=UL070",
                "accession": "GCA_014174475.1",
                "taxid": 2759166,
                "species_taxid": 2759166,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5169,
                "matched_fragments": 1076,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas alcaligenes",
                "strain": "strain=NBRC 14159",
                "accession": "GCA_000467105.1",
                "taxid": 43263,
                "species_taxid": 43263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9477,
                "matched_fragments": 1103,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas alcaligenes",
                "strain": "strain=NCTC10367",
                "accession": "GCA_900455475.1",
                "taxid": 43263,
                "species_taxid": 43263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9185,
                "matched_fragments": 1112,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7734,
                "matched_fragments": 860,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas benzenivorans",
                "strain": "strain=DSM 8628",
                "accession": "GCA_900100495.1",
                "taxid": 556533,
                "species_taxid": 556533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5396,
                "matched_fragments": 941,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas insulae",
                "strain": "strain=UL073",
                "accession": "GCA_016901015.1",
                "taxid": 2809017,
                "species_taxid": 2809017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3618,
                "matched_fragments": 890,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas hydrolytica",
                "strain": "strain=DSWY01",
                "accession": "GCA_021495345.2",
                "taxid": 2493633,
                "species_taxid": 2493633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1418,
                "matched_fragments": 934,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas guguanensis",
                "strain": "strain=JCM 18416",
                "accession": "GCA_900104265.1",
                "taxid": 1198456,
                "species_taxid": 1198456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0455,
                "matched_fragments": 937,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas yangonensis",
                "strain": "strain=MY50",
                "accession": "GCA_009932725.1",
                "taxid": 2579922,
                "species_taxid": 2579922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4538,
                "matched_fragments": 863,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas otitidis",
                "strain": "strain=DSM 17224",
                "accession": "GCA_900111835.1",
                "taxid": 319939,
                "species_taxid": 319939,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.4397,
                "matched_fragments": 936,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas kuykendallii",
                "strain": "strain=NRRL B-59562",
                "accession": "GCA_900106975.1",
                "taxid": 1007099,
                "species_taxid": 1007099,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1268,
                "matched_fragments": 804,
                "total_fragments": 1427,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014164785.1",
                "gtdb_species": "s__Pseudomonas_E sp014164785",
                "ani": 100.0,
                "matched_fragments": 1426,
                "total_fragments": 1427,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013200955.2",
                "gtdb_species": "s__Pseudomonas_E campi",
                "ani": 93.2809,
                "matched_fragments": 1269,
                "total_fragments": 1427,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009799925.1",
                "gtdb_species": "s__Pseudomonas_E sp009799925",
                "ani": 89.6912,
                "matched_fragments": 1093,
                "total_fragments": 1427,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902506505.1",
                "gtdb_species": "s__Pseudomonas_E sp902506505",
                "ani": 89.3838,
                "matched_fragments": 1097,
                "total_fragments": 1427,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.45",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014174475.1",
                "gtdb_species": "s__Pseudomonas_E sp014174475",
                "ani": 86.5304,
                "matched_fragments": 1075,
                "total_fragments": 1427,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000467105.1",
                "gtdb_species": "s__Pseudomonas_E alcaligenes",
                "ani": 85.9463,
                "matched_fragments": 1101,
                "total_fragments": 1427,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.23",
                "min_intra_species_ani": "96.43",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_014851905.1",
                "gtdb_species": "s__Pseudomonas_E sp014851905",
                "ani": 85.6776,
                "matched_fragments": 1027,
                "total_fragments": 1427,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156545.1",
                "gtdb_species": "s__Pseudomonas_E alcaligenes_A",
                "ani": 85.5067,
                "matched_fragments": 1071,
                "total_fragments": 1427,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.95",
                "min_intra_species_ani": "95.95",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900106975.1",
                "gtdb_species": "s__Pseudomonas_O kuykendallii",
                "ani": 82.1367,
                "matched_fragments": 803,
                "total_fragments": 1427,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_O",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.83",
                "min_intra_species_ani": "96.68",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Aquipseudomonas",
        "guryensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}