{ "type": "genome", "identifier": "GCF_014174395.1", "organism": "Gluconacetobacter aggeris", "title": "Gluconacetobacter aggeris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014174395.1", "bioproject": "PRJNA224116", "biosample": "SAMN14650885", "wgs_master": "JABEQD000000000.1", "refseq_category": "reference genome", "taxid": "1286186", "species_taxid": "1286186", "organism_name": "Gluconacetobacter aggeris", "infraspecific_name": "strain=LMG 27801", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/12", "asm_name": "ASM1417439v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_014174395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/174/395/GCF_014174395.1_ASM1417439v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4324546", "genome_size_ungapped": "4324546", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "61", "contig_count": "61", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014174395.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3948", "protein_coding_gene_count": "3813", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-12", "dateModified": "2020-08-12", "datePublished": "2020-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Gluconacetobacter aggeris" ], "sample_taxid": [ "1286186" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.193 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4324546", "Number of Sequences": "61", "Longest Sequences (bp)": "595373", "N50 (bp)": "257252", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.2", "Number of CDSs": "3818", "Average Protein Length": "329.3", "Coding Ratio (%)": "87.2", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gluconacetobacter dulcium", "strain": "strain=LMG 1728", "accession": "GCA_014174165.1", "taxid": 2729096, "species_taxid": 2729096, "relation_to_type": "type", "validated": true, "ani": 88.6578, "matched_fragments": 1003, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter liquefaciens", "strain": "strain=NBRC 12388", "accession": "GCA_006539085.1", "taxid": 89584, "species_taxid": 89584, "relation_to_type": "type", "validated": true, "ani": 88.2148, "matched_fragments": 939, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter liquefaciens", "strain": "strain=LMG 1382", "accession": "GCA_014174285.1", "taxid": 89584, "species_taxid": 89584, "relation_to_type": "type", "validated": true, "ani": 88.1091, "matched_fragments": 982, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter liquefaciens", "strain": "strain=DSM 5603", "accession": "GCA_003350405.1", "taxid": 89584, "species_taxid": 89584, "relation_to_type": "type", "validated": true, "ani": 88.0771, "matched_fragments": 980, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5", "accession": "GCA_000067045.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 83.8746, "matched_fragments": 767, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5; ATCC 49037", "accession": "GCA_000021325.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 83.8089, "matched_fragments": 757, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=LMG 7603", "accession": "GCA_014174315.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 83.7583, "matched_fragments": 759, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "97.86", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003350405.1", "gtdb_species": "s__Gluconacetobacter liquefaciens", "ani": 88.0806, "matched_fragments": 980, "total_fragments": 1416, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.125, "cell_length": 0.204, "doubling_h": null, "growth_tmp": 28.4, "optimum_tmp": 25.0, "optimum_ph": null, "genome_size": 4063757.875, "gc_content": 63.949, "coding_genes": 3555.0, "rRNA16S_genes": 4.0, "tRNA_genes": 55.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gluconacetobacter", "aggeris" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }