{ "type": "genome", "identifier": "GCF_014180685.1", "organism": "Nocardioides pelophilus", "title": "Nocardioides pelophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014180685.1", "bioproject": "PRJNA224116", "biosample": "SAMN15567588", "wgs_master": "JACEHF000000000.1", "refseq_category": "reference genome", "taxid": "2172019", "species_taxid": "2172019", "organism_name": "Nocardioides pelophilus", "infraspecific_name": "strain=CGMCC 4.7388", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/13", "asm_name": "ASM1418068v1", "asm_submitter": "State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan", "gbrs_paired_asm": "GCA_014180685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/180/685/GCF_014180685.1_ASM1418068v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4640730", "genome_size_ungapped": "4639913", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "344", "contig_count": "344", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014180685.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "4726", "protein_coding_gene_count": "4528", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-13", "dateModified": "2020-08-13", "datePublished": "2020-08-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides pelophilus" ], "sample_taxid": [ "2172019" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Kyung Hee University" ], "sample_host_location_id": [], "data_size": "1.241 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4640730", "Number of Sequences": "344", "Longest Sequences (bp)": "206029", "N50 (bp)": "21872", "Gap Ratio (%)": "0.020686", "GCcontent (%)": "71.0", "Number of CDSs": "4187", "Average Protein Length": "310.6", "Coding Ratio (%)": "84.1", "Number of rRNAs": "4", "Number of tRNAs": "56", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides pelophilus", "strain": "strain=CGMCC 4.7388", "accession": "GCA_014180685.1", "taxid": 2172019, 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"matched_fragments": 800, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides carbamazepini", "strain": "strain=CBZ_1", "accession": "GCA_024614185.1", "taxid": 2854259, "species_taxid": 2854259, "relation_to_type": "type", "validated": true, "ani": 81.3762, "matched_fragments": 791, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 80.9125, "matched_fragments": 687, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 80.6113, "matched_fragments": 663, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 80.534, "matched_fragments": 685, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 80.4867, "matched_fragments": 716, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 80.4409, "matched_fragments": 717, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 79.911, "matched_fragments": 542, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides coralli", "strain": "strain=SCSIO 67246", "accession": "GCA_019880385.1", "taxid": 2872154, "species_taxid": 2872154, "relation_to_type": "type", "validated": true, "ani": 79.8061, "matched_fragments": 541, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014180685.1", "gtdb_species": "s__Nocardioides pelophilus", "ani": 100.0, "matched_fragments": 1360, "total_fragments": 1373, "gtdb_taxonomy": 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