{ "type": "genome", "identifier": "GCF_014180715.1", "organism": "Nocardioides stalactiti", "title": "Nocardioides stalactiti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014180715.1", "bioproject": "PRJNA224116", "biosample": "SAMN15567580", "wgs_master": "JACEFC000000000.1", "refseq_category": "reference genome", "taxid": "2755356", "species_taxid": "2755356", "organism_name": "Nocardioides stalactiti", "infraspecific_name": "strain=1.0914", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/13", "asm_name": "ASM1418071v1", "asm_submitter": "State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan", "gbrs_paired_asm": "GCA_014180715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/180/715/GCF_014180715.1_ASM1418071v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4546805", "genome_size_ungapped": "4546437", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "263", "contig_count": "263", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014180715.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "4570", "protein_coding_gene_count": "4419", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-13", "dateModified": "2020-08-13", "datePublished": "2020-08-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides stalactiti" ], "sample_taxid": [ "2755356" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guizhou" ], "sample_host_location_id": [], "data_size": "1.217 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4546805", "Number of Sequences": "263", "Longest Sequences (bp)": "93491", "N50 (bp)": "32221", "Gap Ratio (%)": "0.010953", "GCcontent (%)": "71.1", "Number of CDSs": "4141", "Average Protein Length": "320.7", "Coding Ratio (%)": "87.6", "Number of rRNAs": "4", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides stalactiti", "strain": "strain=1.0914", "accession": "GCA_014180715.1", "taxid": 2755356, "species_taxid": 2755356, 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83.9905, "matched_fragments": 874, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides silvaticus", "strain": "strain=CCTCC AB 2018079", "accession": "GCA_003160695.1", "taxid": 2201891, "species_taxid": 2201891, "relation_to_type": "type", "validated": true, "ani": 83.8406, "matched_fragments": 942, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides immobilis", "strain": "strain=CCTCC AB 2017083", "accession": "GCA_003515065.1", "taxid": 2049295, "species_taxid": 2049295, "relation_to_type": "type", "validated": true, "ani": 83.7709, "matched_fragments": 969, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides thalensis", "strain": "strain=DSM 103833", "accession": "GCA_013410655.1", "taxid": 1914755, "species_taxid": 1914755, "relation_to_type": "type", "validated": true, "ani": 82.1003, "matched_fragments": 824, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pimelobacter simplex", "strain": "strain=ATCC 6946", "accession": "GCA_900114845.1", "taxid": 2045, "species_taxid": 2045, "relation_to_type": "type", "validated": true, "ani": 81.5498, "matched_fragments": 830, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pimelobacter simplex", "strain": "strain=NBRC 12069", "accession": "GCA_006538965.1", "taxid": 2045, "species_taxid": 2045, "relation_to_type": "type", "validated": true, "ani": 81.5461, "matched_fragments": 839, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides carbamazepini", "strain": "strain=CBZ_1", "accession": "GCA_024614185.1", "taxid": 2854259, "species_taxid": 2854259, "relation_to_type": "type", "validated": true, "ani": 81.2319, "matched_fragments": 783, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 80.8191, "matched_fragments": 681, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 80.256, "matched_fragments": 672, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides litoris", "strain": "strain=DSM 103718", "accession": "GCA_006346315.1", "taxid": 1926648, "species_taxid": 1926648, "relation_to_type": "type", "validated": true, "ani": 80.215, "matched_fragments": 666, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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