{
    "type": "genome",
    "identifier": "GCF_014180735.1",
    "organism": "Staphylococcus cohnii subsp. barensis",
    "title": "Staphylococcus cohnii subsp. barensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Milan",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014180735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14142771",
        "wgs_master": "JAALCY000000000.1",
        "refseq_category": "na",
        "taxid": "2834574",
        "species_taxid": "29382",
        "organism_name": "Staphylococcus cohnii subsp. barensis",
        "infraspecific_name": "strain=SC5",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/13",
        "asm_name": "ASM1418073v1",
        "asm_submitter": "University of Milan",
        "gbrs_paired_asm": "GCA_014180735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/180/735/GCF_014180735.1_ASM1418073v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2618490",
        "genome_size_ungapped": "2618029",
        "gc_percent": "32.500000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014180735.1-RS_2024_08_04",
        "annotation_date": "2024-08-04",
        "total_gene_count": "2606",
        "protein_coding_gene_count": "2456",
        "non_coding_gene_count": "84",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-13",
    "dateModified": "2020-08-13",
    "datePublished": "2020-08-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus cohnii subsp. barensis"
        ],
        "sample_taxid": [
            "2834574"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy: Bari"
        ],
        "sample_host_location_id": [],
        "data_size": "0.730 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2618490",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "924966",
        "N50 (bp)": "806540",
        "Gap Ratio (%)": "0.017606",
        "GCcontent (%)": "32.3",
        "Number of CDSs": "2543",
        "Average Protein Length": "284.1",
        "Coding Ratio (%)": "82.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Staphylococcus cohnii subsp. barensis",
                "strain": "strain=SC5",
                "accession": "GCA_014180735.1",
                "taxid": 2834574,
                "species_taxid": 29382,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 862,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus cohnii subsp. cohnii",
                "strain": "strain=NCTC 11041",
                "accession": "GCA_002902365.1",
                "taxid": 74704,
                "species_taxid": 29382,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 95.8332,
                "matched_fragments": 775,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus cohnii",
                "strain": "strain=NCTC11041",
                "accession": "GCA_900458255.1",
                "taxid": 29382,
                "species_taxid": 29382,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7579,
                "matched_fragments": 795,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus ureilyticus",
                "strain": "strain=DSM 6718",
                "accession": "GCA_002902235.1",
                "taxid": 94138,
                "species_taxid": 94138,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.8034,
                "matched_fragments": 731,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus nepalensis",
                "strain": "strain=NCTC13834",
                "accession": "GCA_900458695.1",
                "taxid": 214473,
                "species_taxid": 214473,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4848,
                "matched_fragments": 709,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus shinii",
                "strain": "strain=K22-5M",
                "accession": "GCA_017583065.1",
                "taxid": 2912228,
                "species_taxid": 2912228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6058,
                "matched_fragments": 518,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus succinus subsp. succinus",
                "strain": "strain=DSM 14617",
                "accession": "GCA_001006765.1",
                "taxid": 224030,
                "species_taxid": 61015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3077,
                "matched_fragments": 489,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002902365.1",
                "gtdb_species": "s__Staphylococcus cohnii",
                "ani": 95.8332,
                "matched_fragments": 775,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.14",
                "min_intra_species_ani": "95.73",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 59,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002902235.1",
                "gtdb_species": "s__Staphylococcus ureilyticus",
                "ani": 91.8346,
                "matched_fragments": 729,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 107,
                "status": "-"
            },
            {
                "accession": "GCF_014635045.1",
                "gtdb_species": "s__Staphylococcus nepalensis",
                "ani": 83.3963,
                "matched_fragments": 716,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 23,
                "status": "-"
            },
            {
                "accession": "GCF_000010125.1",
                "gtdb_species": "s__Staphylococcus saprophyticus",
                "ani": 80.6967,
                "matched_fragments": 527,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
                "min_intra_species_ani": "98.75",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 167,
                "status": "-"
            },
            {
                "accession": "GCF_900458565.1",
                "gtdb_species": "s__Staphylococcus equorum",
                "ani": 80.6861,
                "matched_fragments": 523,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "97.35",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 49,
                "status": "-"
            },
            {
                "accession": "GCF_001747895.1",
                "gtdb_species": "s__Staphylococcus equorum_A",
                "ani": 80.6316,
                "matched_fragments": 521,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.34",
                "min_intra_species_ani": "98.64",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_016774515.1",
                "gtdb_species": "s__Staphylococcus xylosus_A",
                "ani": 80.5039,
                "matched_fragments": 519,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.34",
                "min_intra_species_ani": "99.08",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_001431205.1",
                "gtdb_species": "s__Staphylococcus sp001431205",
                "ani": 80.4999,
                "matched_fragments": 498,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002732165.1",
                "gtdb_species": "s__Staphylococcus xylosus",
                "ani": 80.4371,
                "matched_fragments": 510,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.41",
                "min_intra_species_ani": "97.01",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 48,
                "status": "-"
            },
            {
                "accession": "GCF_001006765.1",
                "gtdb_species": "s__Staphylococcus succinus",
                "ani": 80.3077,
                "matched_fragments": 489,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.99",
                "min_intra_species_ani": "95.53",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 24,
                "status": "-"
            },
            {
                "accession": "GCF_002614725.1",
                "gtdb_species": "s__Staphylococcus edaphicus",
                "ani": 80.2376,
                "matched_fragments": 480,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013391405.1",
                "gtdb_species": "s__Staphylococcus sp013391405",
                "ani": 80.1539,
                "matched_fragments": 504,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900097965.1",
                "gtdb_species": "s__Staphylococcus caeli",
                "ani": 80.0688,
                "matched_fragments": 471,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000875895.1",
                "gtdb_species": "s__Staphylococcus gallinarum",
                "ani": 79.7433,
                "matched_fragments": 444,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "98.14",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 25,
                "status": "-"
            },
            {
                "accession": "GCF_003491325.1",
                "gtdb_species": "s__Staphylococcus warneri_A",
                "ani": 78.4362,
                "matched_fragments": 276,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.32",
                "min_intra_species_ani": "98.95",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 22,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.041,
        "cell_length": -0.052,
        "doubling_h": -0.365,
        "growth_tmp": 35.0,
        "optimum_tmp": 34.151,
        "optimum_ph": 6.75,
        "genome_size": 2626495.2,
        "gc_content": 32.487,
        "coding_genes": 2062.0,
        "rRNA16S_genes": 5.698,
        "tRNA_genes": 58.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Staphylococcus",
        "cohnii",
        "subsp.",
        "barensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}