{ "type": "genome", "identifier": "GCF_014190875.1", "organism": "Paeniglutamicibacter cryotolerans", "title": "Paeniglutamicibacter cryotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014190875.1", "bioproject": "PRJNA224116", "biosample": "SAMN11457505", "wgs_master": "JACHVS000000000.1", "refseq_category": "reference genome", "taxid": "670079", "species_taxid": "670079", "organism_name": "Paeniglutamicibacter cryotolerans", "infraspecific_name": "strain=DSM 22826", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419087v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014190875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/190/875/GCF_014190875.1_ASM1419087v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4137774", "genome_size_ungapped": "4137774", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014190875.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3833", "protein_coding_gene_count": "3667", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Paeniglutamicibacter cryotolerans" ], "sample_taxid": [ "670079" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Livingston Island" ], "sample_host_location_id": [], "data_size": "1.148 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4137774", "Number of Sequences": "6", "Longest Sequences (bp)": "2871448", "N50 (bp)": "2871448", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.8", "Number of CDSs": "3876", "Average Protein Length": "306.1", "Coding Ratio (%)": "86.0", "Number of rRNAs": "16", "Number of tRNAs": "61", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paeniglutamicibacter cryotolerans", "strain": "strain=DSM 22826", "accession": "GCA_014190875.1", 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"species_taxid": 254787, "relation_to_type": "type", "validated": true, "ani": 79.8604, "matched_fragments": 516, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter terrestris", "strain": "strain=ANT13_2", "accession": "GCA_012271785.1", "taxid": 2723403, "species_taxid": 2723403, "relation_to_type": "type", "validated": true, "ani": 79.4399, "matched_fragments": 412, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter protophormiae", "strain": "strain=JCM 1973", "accession": "GCA_014647495.1", "taxid": 37930, "species_taxid": 37930, "relation_to_type": "type", "validated": true, "ani": 79.378, "matched_fragments": 397, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter nicotianae", "strain": "strain=NBRC 14234", "accession": "GCA_006539525.1", "taxid": 37929, "species_taxid": 37929, 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true, "ani": 78.6032, "matched_fragments": 333, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.5384, "matched_fragments": 267, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 78.4793, "matched_fragments": 376, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.3478, "matched_fragments": 314, 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"below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014190875.1", "gtdb_species": "s__Paeniglutamicibacter cryotolerans", "ani": 100.0, "matched_fragments": 1371, "total_fragments": 1376, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_017876575.1", "gtdb_species": "s__Paeniglutamicibacter psychrophenolicus", "ani": 81.0186, "matched_fragments": 637, "total_fragments": 1376, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.447, "cell_length": 0.127, "doubling_h": null, "growth_tmp": 16.0, "optimum_tmp": 20.125, "optimum_ph": 7.5, "genome_size": 4338023.5, "gc_content": 63.0, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.25, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paeniglutamicibacter", "cryotolerans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }