{ "type": "genome", "identifier": "GCF_014191235.1", "organism": "Actinoplanes lutulentus", "title": "Actinoplanes lutulentus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014191235.1", "bioproject": "PRJNA224116", "biosample": "SAMN11512348", "wgs_master": "JACHWI000000000.1", "refseq_category": "na", "taxid": "1287878", "species_taxid": "1287878", "organism_name": "Actinoplanes lutulentus", "infraspecific_name": "strain=DSM 45883", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419123v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014191235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/191/235/GCF_014191235.1_ASM1419123v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9837158", "genome_size_ungapped": "9837158", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014191235.1-RS_2024_09_26", "annotation_date": "2024-09-26", "total_gene_count": "8961", "protein_coding_gene_count": "8769", "non_coding_gene_count": "99", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes lutulentus" ], "sample_taxid": [ "1287878" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.663 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9837158", "Number of Sequences": "18", "Longest Sequences (bp)": "1960616", "N50 (bp)": "1141432", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.2", "Number of CDSs": "8987", "Average Protein Length": "328.8", "Coding Ratio (%)": "90.1", "Number of rRNAs": "18", "Number of tRNAs": "99", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes lutulentus", "strain": "strain=DSM 45883", "accession": "GCA_014191235.1", "taxid": 1287878, "species_taxid": 1287878, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3268, "total_fragments": 3270, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes lutulentus", "strain": "strain=CGMCC 4.7090", "accession": "GCA_003259845.1", "taxid": 1287878, "species_taxid": 1287878, "relation_to_type": "type", "validated": true, "ani": 99.9917, "matched_fragments": 3225, "total_fragments": 3270, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes missouriensis", "strain": "strain=431", "accession": "GCA_000284295.1", "taxid": 1866, "species_taxid": 1866, "relation_to_type": "type", "validated": true, "ani": 86.3032, "matched_fragments": 2132, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes capillaceus", "strain": "strain=NBRC 16408", "accession": "GCA_016862055.1", "taxid": 76756, "species_taxid": 76756, "relation_to_type": "type", "validated": true, "ani": 82.9111, "matched_fragments": 1746, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=NBRC 12513", "accession": "GCA_016862255.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 82.7713, "matched_fragments": 1829, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 82.7688, "matched_fragments": 1766, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=JCM 3061", "accession": "GCA_014647815.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 82.7352, "matched_fragments": 1856, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes xinjiangensis", "strain": "strain=DSM 45184", "accession": "GCA_003148685.1", "taxid": 512350, "species_taxid": 512350, "relation_to_type": "type", "validated": true, "ani": 82.4272, "matched_fragments": 1890, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes octamycinicus", "strain": "strain=NBRC 14524", "accession": "GCA_016862295.1", "taxid": 135948, "species_taxid": 135948, "relation_to_type": "type", "validated": true, "ani": 82.3449, "matched_fragments": 1784, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=ATCC 31121", "accession": "GCA_003711105.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 82.342, "matched_fragments": 1580, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=NBRC 13999", "accession": "GCA_016862415.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 82.319, "matched_fragments": 1542, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes regularis", "strain": "strain=NBRC 12514", "accession": "GCA_016862355.1", "taxid": 52697, "species_taxid": 52697, "relation_to_type": "type", "validated": true, "ani": 82.0795, "matched_fragments": 1684, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes regularis", "strain": "strain=DSM 43151", "accession": "GCA_900188005.1", "taxid": 52697, "species_taxid": 52697, "relation_to_type": "type", "validated": true, "ani": 82.0429, "matched_fragments": 1717, "total_fragments": 3270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes cyaneus", "strain": "strain=NBRC 14990", "accession": "GCA_016862095.1", "taxid": 52696, "species_taxid": 52696, 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