{ "type": "genome", "identifier": "GCF_014191545.1", "organism": "Terrihabitans soli", "title": "Terrihabitans soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Advanced Industrial Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014191545.1", "bioproject": "PRJNA224116", "biosample": "SAMD00238716", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "708113", "species_taxid": "708113", "organism_name": "Terrihabitans soli", "infraspecific_name": "strain=IZ6", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/07", "asm_name": "ASM1419154v1", "asm_submitter": "National Institute of Advanced Industrial Science and Technology", "gbrs_paired_asm": "GCA_014191545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/191/545/GCF_014191545.1_ASM1419154v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3114641", "genome_size_ungapped": "3114641", "gc_percent": "62.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014191545.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3184", "protein_coding_gene_count": "3101", "non_coding_gene_count": "58", "pubmed_id": "32906802" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-07", "dateModified": "2020-08-07", "datePublished": "2020-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Terrihabitans soli" ], "sample_taxid": [ "708113" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Shimane Okuizumo" ], "sample_host_location_id": [], "data_size": "0.861 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3114641", "Number of Sequences": "1", "Longest Sequences (bp)": "3114641", "N50 (bp)": "3114641", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "3166", "Average Protein Length": "301.3", "Coding Ratio (%)": "91.9", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Terrihabitans soli", "strain": "strain=IZ6", "accession": "GCA_014191545.1", "taxid": 708113, "species_taxid": 708113, 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95, "status": "below_threshold" }, { "organism_name": "Microvirga lotononidis", "strain": "strain=WSM3557", "accession": "GCA_000262405.1", "taxid": 864069, "species_taxid": 864069, "relation_to_type": "type", "validated": true, "ani": 77.4674, "matched_fragments": 174, "total_fragments": 1038, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea robiniae", "strain": "strain=DSM 26672", "accession": "GCA_900102525.1", "taxid": 1036780, "species_taxid": 1036780, "relation_to_type": "type", "validated": true, "ani": 77.4464, "matched_fragments": 246, "total_fragments": 1038, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hansschlegelia beijingensis", "strain": "strain=DSM 25481", "accession": "GCA_014196425.1", "taxid": 1133344, "species_taxid": 1133344, "relation_to_type": "type", "validated": true, "ani": 77.366, "matched_fragments": 217, "total_fragments": 1038, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agaricicola taiwanensis", "strain": "strain=CCM 7684", "accession": "GCA_014635245.1", "taxid": 591372, "species_taxid": 591372, "relation_to_type": "type", "validated": true, "ani": 77.3599, "matched_fragments": 189, "total_fragments": 1038, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga splendida", "strain": "strain=BT325", "accession": "GCA_016427565.1", "taxid": 2795727, "species_taxid": 2795727, "relation_to_type": "type", "validated": true, "ani": 77.3402, "matched_fragments": 161, "total_fragments": 1038, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter aminoxidans", "strain": "strain=ATCC BAA-299", "accession": "GCA_023571765.1", "taxid": 186280, "species_taxid": 186280, "relation_to_type": "type", "validated": true, "ani": 77.3157, "matched_fragments": 186, "total_fragments": 1038, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium septentrionale", "strain": 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83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 77.2485, "matched_fragments": 191, "total_fragments": 1038, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aminovorans", "strain": "strain=DSM 7048", "accession": "GCA_004341645.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 77.2111, "matched_fragments": 179, "total_fragments": 1038, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium zhanjiangense", "strain": "strain=CCBAU 51778", "accession": "GCA_004114935.1", "taxid": 1325107, "species_taxid": 1325107, "relation_to_type": "type", "validated": true, "ani": 77.19, "matched_fragments": 242, "total_fragments": 1038, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azorhizobium doebereinerae", "strain": "strain=UFLA1-100", "accession": "GCA_000473085.1", "taxid": 281091, "species_taxid": 281091, 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