{ "type": "genome", "identifier": "GCF_014191555.1", "organism": "Corynebacterium bovis DSM 20582 = CIP 54.80", "title": "Corynebacterium bovis DSM 20582 = CIP 54.80", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014191555.1", "bioproject": "PRJNA224116", "biosample": "SAMN12024754", "wgs_master": "JACHWT000000000.1", "refseq_category": "na", "taxid": "927655", "species_taxid": "36808", "organism_name": "Corynebacterium bovis DSM 20582 = CIP 54.80", "infraspecific_name": "strain=DSM 20582", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419155v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014191555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/191/555/GCF_014191555.1_ASM1419155v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2694851", "genome_size_ungapped": "2694851", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014191555.1-RS_2024_09_26", "annotation_date": "2024-09-26", "total_gene_count": "2205", "protein_coding_gene_count": "2109", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium bovis DSM 20582 = CIP 54.80" ], "sample_taxid": [ "927655" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Washington, DC" ], "sample_host_location_id": [], "data_size": "0.707 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2694851", "Number of Sequences": "15", "Longest Sequences (bp)": "548325", "N50 (bp)": "303928", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.9", "Number of CDSs": "2202", "Average Protein Length": "353.5", "Coding Ratio (%)": "86.7", "Number of rRNAs": "9", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium bovis", "strain": "strain=DSM 20582", "accession": "GCA_014191555.1", "taxid": 36808, 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890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium phoceense", "strain": "strain=MC1", "accession": "GCA_900092335.1", "taxid": 1686286, "species_taxid": 1686286, "relation_to_type": "type", "validated": true, "ani": 77.1335, "matched_fragments": 183, "total_fragments": 890, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000183325.1", "gtdb_species": "s__Corynebacterium bovis", "ani": 99.5792, "matched_fragments": 593, "total_fragments": 890, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 23, "status": "conclusive" }, { "accession": 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