{ "type": "genome", "identifier": "GCF_014191635.1", "organism": "Mucilaginibacter gotjawali", "title": "Mucilaginibacter gotjawali", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014191635.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025519", "wgs_master": "JACHWX000000000.1", "refseq_category": "na", "taxid": "1550579", "species_taxid": "1550579", "organism_name": "Mucilaginibacter gotjawali", "infraspecific_name": "strain=CECT 8628", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419163v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014191635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/191/635/GCF_014191635.1_ASM1419163v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6309371", "genome_size_ungapped": "6308610", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014191635.1-RS_2024_09_26", "annotation_date": "2024-09-26", "total_gene_count": "5481", "protein_coding_gene_count": "5401", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter gotjawali" ], "sample_taxid": [ "1550579" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.788 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6309371", "Number of Sequences": "49", "Longest Sequences (bp)": "741667", "N50 (bp)": "291674", "Gap Ratio (%)": "0.012061", "GCcontent (%)": "43.2", "Number of CDSs": "5323", "Average Protein Length": "339.9", "Coding Ratio (%)": "86.0", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=CECT 8628", "accession": "GCA_014191635.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2078, 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95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter segetis", "strain": "strain=SD-g", "accession": "GCA_016522075.1", "taxid": 2793071, "species_taxid": 2793071, "relation_to_type": "type", "validated": true, "ani": 77.739, "matched_fragments": 231, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter corticis", "strain": "strain=MAH-19", "accession": "GCA_007558865.1", "taxid": 2597670, "species_taxid": 2597670, "relation_to_type": "type", "validated": true, "ani": 77.5313, "matched_fragments": 294, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter limnophilus", "strain": "strain=YBJ-36", "accession": "GCA_004005815.1", "taxid": 1932778, "species_taxid": 1932778, "relation_to_type": "type", "validated": true, "ani": 77.412, "matched_fragments": 193, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pankratovii", "strain": "strain=ZT4R22", "accession": "GCA_014773265.1", "taxid": 2772110, "species_taxid": 2772110, "relation_to_type": "type", "validated": true, "ani": 77.4019, "matched_fragments": 347, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter kameinonensis", "strain": "strain=SCK", "accession": "GCA_003675385.1", "taxid": 452286, "species_taxid": 452286, "relation_to_type": "type", "validated": true, "ani": 77.3928, "matched_fragments": 317, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 77.374, "matched_fragments": 320, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 77.3526, "matched_fragments": 389, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginsenosidivorax", "strain": "strain=KHI28", "accession": "GCA_007971525.1", "taxid": 862126, "species_taxid": 862126, "relation_to_type": "type", "validated": true, "ani": 77.3331, "matched_fragments": 405, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 77.2764, "matched_fragments": 316, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.0137, "matched_fragments": 211, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginsenosidivorans", "strain": "strain=Gsoil 3017", "accession": "GCA_007971025.1", "taxid": 398053, "species_taxid": 398053, "relation_to_type": "type", "validated": true, "ani": 76.7935, "matched_fragments": 340, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 76.7774, "matched_fragments": 259, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter xinjiangensis", "strain": "strain=CCTCC AB 208092", "accession": "GCA_024436435.1", "taxid": 539206, "species_taxid": 539206, "relation_to_type": "type", "validated": true, "ani": 76.064, "matched_fragments": 52, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002355435.1", "gtdb_species": "s__Mucilaginibacter gotjawali", "ani": 99.994, "matched_fragments": 2079, "total_fragments": 2080, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_903913935.1", "gtdb_species": "s__Mucilaginibacter sp903913935", "ani": 89.3577, "matched_fragments": 1215, "total_fragments": 2080, "gtdb_taxonomy": 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