{ "type": "genome", "identifier": "GCF_014191935.1", "organism": "Actinoplanes campanulatus", "title": "Actinoplanes campanulatus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014191935.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025112", "wgs_master": "JACHXF000000000.1", "refseq_category": "na", "taxid": "113559", "species_taxid": "113559", "organism_name": "Actinoplanes campanulatus", "infraspecific_name": "strain=CECT 3287", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419193v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014191935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/191/935/GCF_014191935.1_ASM1419193v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9961532", "genome_size_ungapped": "9960942", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014191935.1-RS_2024_09_26", "annotation_date": "2024-09-26", "total_gene_count": "9307", "protein_coding_gene_count": "9094", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes campanulatus" ], "sample_taxid": [ "113559" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.674 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9961532", "Number of Sequences": "53", "Longest Sequences (bp)": "1244668", "N50 (bp)": "415669", "Gap Ratio (%)": "0.005923", "GCcontent (%)": "70.9", "Number of CDSs": "9309", "Average Protein Length": "321.9", "Coding Ratio (%)": "90.2", "Number of rRNAs": "3", "Number of tRNAs": "94", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes campanulatus", "strain": "strain=JCM 3059", "accession": "GCA_014647795.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 99.9892, "matched_fragments": 3257, "total_fragments": 3290, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=NBRC 12511", "accession": "GCA_016862035.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 99.9764, "matched_fragments": 3210, "total_fragments": 3290, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Actinoplanes capillaceus", "strain": "strain=NBRC 16408", "accession": "GCA_016862055.1", "taxid": 76756, "species_taxid": 76756, "relation_to_type": "type", "validated": true, "ani": 96.7086, "matched_fragments": 2735, "total_fragments": 3290, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Actinoplanes hulinensis", "strain": "strain=NEAU-M9", "accession": "GCA_019429605.1", "taxid": 1144547, "species_taxid": 1144547, "relation_to_type": "type", "validated": true, "ani": 96.3234, "matched_fragments": 2726, "total_fragments": 3290, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=NBRC 12513", "accession": "GCA_016862255.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 95.1035, "matched_fragments": 2692, "total_fragments": 3290, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=JCM 3061", "accession": "GCA_014647815.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 95.0744, "matched_fragments": 2772, "total_fragments": 3290, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 93.904, "matched_fragments": 2714, "total_fragments": 3290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes brasiliensis", "strain": "strain=NBRC 13938", "accession": "GCA_016862015.1", "taxid": 52695, "species_taxid": 52695, "relation_to_type": "type", "validated": true, "ani": 80.7786, "matched_fragments": 1469, "total_fragments": 3290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes brasiliensis", "strain": "strain=DSM 43805", "accession": "GCA_004362215.1", "taxid": 52695, "species_taxid": 52695, "relation_to_type": "type", "validated": true, "ani": 80.7499, "matched_fragments": 1505, "total_fragments": 3290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes friuliensis", "strain": "strain=DSM 7358", "accession": "GCA_000494755.1", "taxid": 196914, "species_taxid": 196914, "relation_to_type": "type", "validated": true, "ani": 79.8816, "matched_fragments": 1423, "total_fragments": 3290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 79.1571, "matched_fragments": 923, "total_fragments": 3290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 78.7959, "matched_fragments": 1141, "total_fragments": 3290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora paridis", "strain": "strain=NEAU-CL2", "accession": "GCA_009720365.1", "taxid": 1617086, "species_taxid": 1617086, "relation_to_type": "type", "validated": true, "ani": 77.8802, "matched_fragments": 1138, "total_fragments": 3290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium roseum", "strain": "strain=NRRL B-16295", "accession": "GCA_025264685.1", "taxid": 47989, 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