{ "type": "genome", "identifier": "GCF_014192155.1", "organism": "Roseateles terrae", "title": "Roseateles terrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014192155.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025520", "wgs_master": "JACHXO000000000.1", "refseq_category": "reference genome", "taxid": "431060", "species_taxid": "431060", "organism_name": "Roseateles terrae", "infraspecific_name": "strain=CECT 7247", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419215v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014192155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/192/155/GCF_014192155.1_ASM1419215v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5513121", "genome_size_ungapped": "5513024", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014192155.1-RS_2024_09_19", "annotation_date": "2024-09-19", "total_gene_count": "4770", "protein_coding_gene_count": "4663", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseateles terrae" ], "sample_taxid": [ "431060" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.513 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5513121", "Number of Sequences": "17", "Longest Sequences (bp)": "1481983", "N50 (bp)": "496698", "Gap Ratio (%)": "0.001759", "GCcontent (%)": "66.4", "Number of CDSs": "4806", "Average Protein Length": "343.0", "Coding Ratio (%)": "89.7", "Number of rRNAs": "1", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseateles terrae", "strain": "strain=CECT 7247", "accession": "GCA_014192155.1", "taxid": 431060, "species_taxid": 431060, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1827, "total_fragments": 1828, "ani_threshold": 95, 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"GCA_004362525.1", "taxid": 270368, "species_taxid": 270368, "relation_to_type": "type", "validated": true, "ani": 79.1585, "matched_fragments": 679, "total_fragments": 1828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, "species_taxid": 2831643, "relation_to_type": "type", "validated": true, "ani": 79.1556, "matched_fragments": 538, "total_fragments": 1828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_002933415.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 79.0866, "matched_fragments": 497, "total_fragments": 1828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, 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