{ "type": "genome", "identifier": "GCF_014192285.1", "organism": "Halomonas fontilapidosi", "title": "Halomonas fontilapidosi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014192285.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025132", "wgs_master": "JACHXQ000000000.1", "refseq_category": "reference genome", "taxid": "616675", "species_taxid": "616675", "organism_name": "Halomonas fontilapidosi", "infraspecific_name": "strain=CECT 7341", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419228v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014192285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/192/285/GCF_014192285.1_ASM1419228v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3598958", "genome_size_ungapped": "3598775", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014192285.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3407", "protein_coding_gene_count": "3316", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas fontilapidosi" ], "sample_taxid": [ "616675" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.996 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3598958", "Number of Sequences": "23", "Longest Sequences (bp)": "776580", "N50 (bp)": "264000", "Gap Ratio (%)": "0.005085", "GCcontent (%)": "65.4", "Number of CDSs": "3351", "Average Protein Length": "323.0", "Coding Ratio (%)": "90.2", "Number of rRNAs": "4", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas fontilapidosi", "strain": "strain=CECT 7341", "accession": "GCA_014192285.1", "taxid": 616675, "species_taxid": 616675, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1188, "total_fragments": 1188, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 89.3761, "matched_fragments": 987, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 86.7179, "matched_fragments": 937, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas daqiaonensis", "strain": "strain=CGMCC 1.9150", "accession": "GCA_900109725.1", "taxid": 650850, "species_taxid": 650850, "relation_to_type": "type", "validated": true, "ani": 86.1425, "matched_fragments": 884, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aestuarii", "strain": "strain=Hb3", "accession": "GCA_001886615.1", "taxid": 1897729, "species_taxid": 1897729, "relation_to_type": "type", "validated": true, "ani": 85.8586, "matched_fragments": 896, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas urmiana", "strain": "strain=TBZ3", "accession": "GCA_005780185.1", "taxid": 490901, "species_taxid": 490901, "relation_to_type": "type", "validated": true, "ani": 85.8141, "matched_fragments": 896, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 85.7307, "matched_fragments": 906, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 85.3401, "matched_fragments": 876, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 84.1391, "matched_fragments": 848, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alimentaria", "strain": "strain=DSM 15356", "accession": "GCA_009902005.1", "taxid": 147248, "species_taxid": 147248, "relation_to_type": "type", "validated": true, "ani": 83.6287, "matched_fragments": 777, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.59", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_902500215.1", "gtdb_species": "s__Halomonas sp902500215", "ani": 86.7049, "matched_fragments": 938, "total_fragments": 1188, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109725.1", "gtdb_species": "s__Halomonas daqiaonensis", "ani": 86.1319, "matched_fragments": 885, "total_fragments": 1188, "gtdb_taxonomy": 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