{
    "type": "genome",
    "identifier": "GCF_014192335.1",
    "organism": "Aporhodopirellula rubra",
    "title": "Aporhodopirellula rubra",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014192335.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12025204",
        "wgs_master": "JACHXU000000000.1",
        "refseq_category": "reference genome",
        "taxid": "980271",
        "species_taxid": "980271",
        "organism_name": "Aporhodopirellula rubra",
        "infraspecific_name": "strain=CECT 8075",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/14",
        "asm_name": "ASM1419233v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_014192335.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/192/335/GCF_014192335.1_ASM1419233v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8548319",
        "genome_size_ungapped": "8547342",
        "gc_percent": "56.000000",
        "replicon_count": "0",
        "scaffold_count": "75",
        "contig_count": "75",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014192335.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "6200",
        "protein_coding_gene_count": "6066",
        "non_coding_gene_count": "79",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-14",
    "dateModified": "2020-08-14",
    "datePublished": "2020-08-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aporhodopirellula rubra"
        ],
        "sample_taxid": [
            "980271"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.415 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8548319",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "688126",
        "N50 (bp)": "282256",
        "Gap Ratio (%)": "0.011429",
        "GCcontent (%)": "56.0",
        "Number of CDSs": "6195",
        "Average Protein Length": "390.1",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "78",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhodopirellula rubra",
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                "species_taxid": 980271,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2811,
                "total_fragments": 2812,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rhodopirellula aestuarii",
                "strain": "strain=ICT_H3.1",
                "accession": "GCA_023701485.1",
                "taxid": 2950107,
                "species_taxid": 2950107,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1332,
                "total_fragments": 2812,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodopirellula sallentina",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "species_taxid": 406547,
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                "ani": 78.2203,
                "matched_fragments": 220,
                "total_fragments": 2812,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "taxid": 2714738,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodopirellula solitaria",
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                "species_taxid": 2527987,
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            {
                "organism_name": "Rhodopirellula islandica",
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            {
                "organism_name": "Rhodopirellula europaea",
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                "accession": "GCA_000338295.1",
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                "species_taxid": 1263866,
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                "matched_fragments": 290,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Roseiconus nitratireducens",
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}