{
    "type": "genome",
    "identifier": "GCF_014193585.1",
    "organism": "Geomonas paludis",
    "title": "Geomonas paludis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bioproduction Research Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014193585.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00230359",
        "wgs_master": "BLXY00000000.1",
        "refseq_category": "na",
        "taxid": "2740185",
        "species_taxid": "2740185",
        "organism_name": "Geomonas paludis",
        "infraspecific_name": "strain=Red736",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/06",
        "asm_name": "ASM1419358v1",
        "asm_submitter": "Bioproduction Research Institute",
        "gbrs_paired_asm": "GCA_014193585.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/193/585/GCF_014193585.1_ASM1419358v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5114951",
        "genome_size_ungapped": "5114951",
        "gc_percent": "62.500000",
        "replicon_count": "0",
        "scaffold_count": "30",
        "contig_count": "30",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014193585.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "4369",
        "protein_coding_gene_count": "4272",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-06",
    "dateModified": "2020-08-06",
    "datePublished": "2020-08-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Geomonas paludis"
        ],
        "sample_taxid": [
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        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
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        ],
        "sample_host_location_id": [],
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        "sample_ph_range": {
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            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
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        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
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        "Longest Sequences (bp)": "1368605",
        "N50 (bp)": "475719",
        "Gap Ratio (%)": "0.000274",
        "GCcontent (%)": "62.4",
        "Number of CDSs": "4340",
        "Average Protein Length": "342.9",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Geomonas paludis",
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                "relation_to_type": "type",
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                "total_fragments": 1688,
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                "status": "conclusive"
            },
            {
                "organism_name": "Geomonas anaerohicana",
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                "species_taxid": 2798583,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geomonas azotofigens",
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                "species_taxid": 2843196,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geomonas agri",
                "strain": "strain=RG53",
                "accession": "GCA_020179605.1",
                "taxid": 2873702,
                "species_taxid": 2873702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1745,
                "matched_fragments": 1238,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geomonas propionica",
                "strain": "strain=Red259",
                "accession": "GCA_016458235.1",
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                "species_taxid": 2798582,
                "relation_to_type": "type",
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                "ani": 88.9692,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_014193585.1",
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                "matched_fragments": 1688,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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                "accession": "GCF_016458305.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018919395.1",
                "gtdb_species": "s__Geomonas sp018919395",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018986915.1",
                "gtdb_species": "s__Geomonas sp018986915",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018986935.1",
                "gtdb_species": "s__Geomonas sp018986935",
                "ani": 88.6479,
                "matched_fragments": 1274,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geomonas",
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                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_019203205.1",
                "gtdb_species": "s__Geomonas sp019203205",
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                "matched_fragments": 1332,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
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                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
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        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
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        "range_salinity": null,
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        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Geomonas",
        "paludis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}