{ "type": "genome", "identifier": "GCF_014195505.1", "organism": "Nonomuraea dietziae", "title": "Nonomuraea dietziae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014195505.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025032", "wgs_master": "JACIBV000000000.1", "refseq_category": "reference genome", "taxid": "65515", "species_taxid": "65515", "organism_name": "Nonomuraea dietziae", "infraspecific_name": "strain=DSM 44320", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419550v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014195505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/195/505/GCF_014195505.1_ASM1419550v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10244150", "genome_size_ungapped": "10244150", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014195505.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "9932", "protein_coding_gene_count": "9606", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea dietziae" ], "sample_taxid": [ "65515" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.752 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10244150", "Number of Sequences": "3", "Longest Sequences (bp)": "8951867", "N50 (bp)": "8951867", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.3", "Number of CDSs": "9984", "Average Protein Length": "305.5", "Coding Ratio (%)": "89.3", "Number of rRNAs": "18", "Number of tRNAs": "76", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea dietziae", "strain": "strain=DSM 44320", "accession": "GCA_014195505.1", "taxid": 65515, "species_taxid": 65515, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3413, "total_fragments": 3413, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nonomuraea africana", "strain": "strain=DSM 43748", "accession": "GCA_014873535.1", "taxid": 46171, "species_taxid": 46171, "relation_to_type": "type", "validated": true, "ani": 90.9778, "matched_fragments": 2467, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 82.0056, "matched_fragments": 1148, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 81.9816, "matched_fragments": 1837, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=CGMCC 4.7368", "accession": "GCA_014646355.1", "taxid": 2045107, "species_taxid": 2045107, "relation_to_type": "type", "validated": true, "ani": 81.7935, "matched_fragments": 1567, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea antri", "strain": "strain=NN258", "accession": "GCA_013283785.1", "taxid": 2730852, "species_taxid": 2730852, "relation_to_type": "type", "validated": true, "ani": 81.6939, "matched_fragments": 1804, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 81.6729, "matched_fragments": 1876, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea candida", "strain": "strain=NRRL B-24552", "accession": "GCA_000725485.1", "taxid": 359159, "species_taxid": 359159, "relation_to_type": "type", "validated": true, "ani": 81.6558, "matched_fragments": 1840, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 81.6436, "matched_fragments": 1868, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea glycinis", "strain": "strain=NEAU-BB2C19", "accession": "GCA_020215885.1", "taxid": 2047744, "species_taxid": 2047744, "relation_to_type": "type", "validated": true, "ani": 81.6425, "matched_fragments": 1696, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rubra", "strain": "strain=DSM 43768", "accession": "GCA_014207985.1", "taxid": 46180, "species_taxid": 46180, "relation_to_type": 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"matched_fragments": 1723, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea typhae", "strain": "strain=p1410", "accession": "GCA_009760925.1", "taxid": 2603600, "species_taxid": 2603600, "relation_to_type": "type", "validated": true, "ani": 81.5381, "matched_fragments": 1873, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea terrae", "strain": "strain=CH32", "accession": "GCA_004348995.1", "taxid": 2530383, "species_taxid": 2530383, "relation_to_type": "type", "validated": true, "ani": 81.3949, "matched_fragments": 1599, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aridisoli", "strain": "strain=KC333", "accession": "GCA_003236395.1", "taxid": 2070368, "species_taxid": 2070368, "relation_to_type": "type", "validated": true, "ani": 81.364, "matched_fragments": 1578, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora siamensis", "strain": "strain=NBRC 107568", "accession": "GCA_016863175.1", "taxid": 936338, "species_taxid": 936338, "relation_to_type": "type", "validated": true, "ani": 80.6985, "matched_fragments": 1577, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora takensis", "strain": "strain=NBRC 109077", "accession": "GCA_016863195.1", "taxid": 1367882, "species_taxid": 1367882, "relation_to_type": "type", "validated": true, "ani": 80.6512, "matched_fragments": 1529, "total_fragments": 3413, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014195505.1", "gtdb_species": "s__Nonomuraea dietziae", "ani": 100.0, "matched_fragments": 3413, "total_fragments": 3413, "gtdb_taxonomy": 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