{ "type": "genome", "identifier": "GCF_014195675.1", "organism": "Erythrobacter ramosus", "title": "Erythrobacter ramosus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014195675.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025528", "wgs_master": "JACICE000000000.1", "refseq_category": "reference genome", "taxid": "35811", "species_taxid": "35811", "organism_name": "Erythrobacter ramosus", "infraspecific_name": "strain=DSM 8510", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419567v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014195675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/195/675/GCF_014195675.1_ASM1419567v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3342622", "genome_size_ungapped": "3342622", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014195675.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "3234", "protein_coding_gene_count": "3169", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Erythrobacter ramosus" ], "sample_taxid": [ "35811" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Lake Baykal region" ], "sample_host_location_id": [], "data_size": "0.926 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3342622", "Number of Sequences": "10", "Longest Sequences (bp)": "1324139", "N50 (bp)": "1313129", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.1", "Number of CDSs": "3194", "Average Protein Length": "317.5", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erythrobacter ramosus", "strain": "strain=DSM 8510", "accession": "GCA_014195675.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1109, "total_fragments": 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"below_threshold" }, { "organism_name": "Erythrobacter neustonensis", "strain": "strain=DSM 9434", "accession": "GCA_001663175.1", "taxid": 1112, "species_taxid": 1112, "relation_to_type": "type", "validated": true, "ani": 83.0758, "matched_fragments": 747, "total_fragments": 1109, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter sanguineus", "strain": "strain=JCM 20691", "accession": "GCA_002155655.1", "taxid": 198312, "species_taxid": 198312, "relation_to_type": "type", "validated": true, "ani": 82.9231, "matched_fragments": 745, "total_fragments": 1109, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSW-74", "accession": "GCA_001677335.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 82.6919, "matched_fragments": 721, "total_fragments": 1109, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter 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