{
    "type": "genome",
    "identifier": "GCF_014196095.1",
    "organism": "Parageobacillus toebii NBRC 107807",
    "title": "Parageobacillus toebii NBRC 107807",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014196095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14908466",
        "wgs_master": "JACICZ000000000.1",
        "refseq_category": "na",
        "taxid": "1223503",
        "species_taxid": "153151",
        "organism_name": "Parageobacillus toebii NBRC 107807",
        "infraspecific_name": "strain=DSM 14590",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/14",
        "asm_name": "ASM1419609v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_014196095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/196/095/GCF_014196095.1_ASM1419609v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3250809",
        "genome_size_ungapped": "3250605",
        "gc_percent": "42.000000",
        "replicon_count": "0",
        "scaffold_count": "37",
        "contig_count": "37",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014196095.1-RS_2024_09_26",
        "annotation_date": "2024-09-26",
        "total_gene_count": "3413",
        "protein_coding_gene_count": "3188",
        "non_coding_gene_count": "95",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-14",
    "dateModified": "2020-08-14",
    "datePublished": "2020-08-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parageobacillus toebii NBRC 107807"
        ],
        "sample_taxid": [
            "1223503"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.921 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3250809",
        "Number of Sequences": "37",
        "Longest Sequences (bp)": "550780",
        "N50 (bp)": "216262",
        "Gap Ratio (%)": "0.006275",
        "GCcontent (%)": "42.1",
        "Number of CDSs": "3292",
        "Average Protein Length": "281.8",
        "Coding Ratio (%)": "85.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "76",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Parageobacillus toebii",
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                "relation_to_type": "type",
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            {
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            {
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parageobacillus thermoglucosidasius",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parageobacillus caldoxylosilyticus",
                "strain": "strain=DSM 12041",
                "accession": "GCA_014196025.1",
                "taxid": 81408,
                "species_taxid": 81408,
                "relation_to_type": "type",
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                "ani": 84.9013,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Parageobacillus caldoxylosilyticus",
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                "accession": "GCA_000632715.1",
                "taxid": 81408,
                "species_taxid": 81408,
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                "matched_fragments": 796,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anoxybacillus kestanbolensis",
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                "accession": "GCA_023653015.1",
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                "species_taxid": 227476,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus kokaensis",
                "strain": "strain=LOB 377",
                "accession": "GCA_014656545.1",
                "taxid": 2759023,
                "species_taxid": 2759023,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 66,
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                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
            {
                "accession": "GCF_003688615.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Parageobacillus",
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            },
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                "accession": "GCF_001655645.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_000632515.1",
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            },
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                "accession": "GCF_000632715.1",
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        ]
    },
    "_bac2feature": {
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        "coding_genes": 3674.286,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Parageobacillus",
        "toebii",
        "NBRC",
        "107807"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}