{ "type": "genome", "identifier": "GCF_014196345.1", "organism": "Methylobacterium brachythecii", "title": "Methylobacterium brachythecii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014196345.1", "bioproject": "PRJNA224116", "biosample": "SAMN13172767", "wgs_master": "JACIDN000000000.1", "refseq_category": "reference genome", "taxid": "1176177", "species_taxid": "1176177", "organism_name": "Methylobacterium brachythecii", "infraspecific_name": "strain=DSM 24105", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419634v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014196345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/196/345/GCF_014196345.1_ASM1419634v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5409070", "genome_size_ungapped": "5409070", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014196345.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5180", "protein_coding_gene_count": "5065", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium brachythecii" ], "sample_taxid": [ "1176177" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.485 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5409070", "Number of Sequences": "29", "Longest Sequences (bp)": "823659", "N50 (bp)": "506666", "Gap Ratio (%)": "0.000148", "GCcontent (%)": "66.6", "Number of CDSs": "5162", "Average Protein Length": "301.4", "Coding Ratio (%)": "86.3", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium brachythecii", "strain": "strain=DSM 24105", "accession": "GCA_014196345.1", "taxid": 1176177, 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805, "total_fragments": 1787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=IER25-16", "accession": "GCA_002759055.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 79.5897, "matched_fragments": 553, "total_fragments": 1787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 76.2869, "matched_fragments": 268, "total_fragments": 1787, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014196345.1", "gtdb_species": "s__Methylobacterium brachythecii", "ani": 100.0, "matched_fragments": 1786, "total_fragments": 1787, "gtdb_taxonomy": 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