{ "type": "genome", "identifier": "GCF_014197435.1", "organism": "Gordonia humi", "title": "Gordonia humi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014197435.1", "bioproject": "PRJNA224116", "biosample": "SAMN05877986", "wgs_master": "JACIFP000000000.1", "refseq_category": "reference genome", "taxid": "686429", "species_taxid": "686429", "organism_name": "Gordonia humi", "infraspecific_name": "strain=DSM 45298", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419743v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014197435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/197/435/GCF_014197435.1_ASM1419743v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5088437", "genome_size_ungapped": "5088437", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014197435.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4737", "protein_coding_gene_count": "4591", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia humi" ], "sample_taxid": [ "686429" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.376 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5088437", "Number of Sequences": "3", "Longest Sequences (bp)": "4856907", "N50 (bp)": "4856907", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "4747", "Average Protein Length": "327.0", "Coding Ratio (%)": "91.5", "Number of rRNAs": "12", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia humi", "strain": "strain=DSM 45298", "accession": "GCA_014197435.1", "taxid": 686429, "species_taxid": 686429, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1692, "total_fragments": 1694, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gordonia spumicola", "strain": "strain=NBRC 107696", "accession": "GCA_009932475.1", "taxid": 589161, "species_taxid": 589161, "relation_to_type": "type", "validated": true, "ani": 81.6508, "matched_fragments": 880, "total_fragments": 1694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia malaquae", "strain": "strain=DSM 45064", "accession": "GCA_900105435.1", "taxid": 410332, "species_taxid": 410332, "relation_to_type": "type", "validated": true, "ani": 80.9012, "matched_fragments": 835, "total_fragments": 1694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia malaquae", "strain": "strain=NBRC 108250", "accession": "GCA_000344135.1", "taxid": 410332, "species_taxid": 410332, "relation_to_type": "type", "validated": true, "ani": 80.8824, "matched_fragments": 808, "total_fragments": 1694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia phthalatica", "strain": "strain=QH-11", "accession": "GCA_001305675.1", "taxid": 1136941, "species_taxid": 1136941, "relation_to_type": "type", "validated": true, "ani": 80.8026, "matched_fragments": 785, "total_fragments": 1694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia zhaorongruii", "strain": "strain=HY186", "accession": "GCA_007559005.1", "taxid": 2597659, "species_taxid": 2597659, "relation_to_type": "type", "validated": true, "ani": 80.5973, "matched_fragments": 701, "total_fragments": 1694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia neofelifaecis", "strain": "strain=NRRL B-59395", "accession": "GCA_000192435.2", "taxid": 945692, "species_taxid": 945692, "relation_to_type": "type", "validated": true, "ani": 80.3976, "matched_fragments": 735, "total_fragments": 1694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia shandongensis", "strain": "strain=DSM 45094", "accession": "GCA_000423025.1", "taxid": 376351, "species_taxid": 376351, "relation_to_type": "type", "validated": true, "ani": 80.0543, "matched_fragments": 629, "total_fragments": 1694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia hydrophobica", "strain": "strain=NBRC 16057", "accession": "GCA_001592365.1", "taxid": 40516, "species_taxid": 40516, "relation_to_type": "type", "validated": true, "ani": 80.0293, "matched_fragments": 805, "total_fragments": 1694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia westfalica", "strain": "strain=DSM 44215", "accession": "GCA_900105725.1", "taxid": 158898, "species_taxid": 158898, "relation_to_type": "type", "validated": true, "ani": 79.1497, "matched_fragments": 628, "total_fragments": 1694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia alkanivorans", "strain": "strain=NBRC 16433", "accession": "GCA_000225505.1", "taxid": 84096, "species_taxid": 84096, 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