{ "type": "genome", "identifier": "GCF_014197795.1", "organism": "Roseospira goensis", "title": "Roseospira goensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014197795.1", "bioproject": "PRJNA224116", "biosample": "SAMN13165051", "wgs_master": "JACIGI000000000.1", "refseq_category": "reference genome", "taxid": "391922", "species_taxid": "391922", "organism_name": "Roseospira goensis", "infraspecific_name": "strain=JA135", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419779v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014197795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/197/795/GCF_014197795.1_ASM1419779v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4186852", "genome_size_ungapped": "4185993", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014197795.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3689", "protein_coding_gene_count": "3601", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseospira goensis" ], "sample_taxid": [ "391922" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "1.127 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4186852", "Number of Sequences": "82", "Longest Sequences (bp)": "244813", "N50 (bp)": "124150", "Gap Ratio (%)": "0.020517", "GCcontent (%)": "71.2", "Number of CDSs": "3673", "Average Protein Length": "331.8", "Coding Ratio (%)": "87.3", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseospira goensis", "strain": "strain=JA135", "accession": "GCA_014197795.1", "taxid": 391922, "species_taxid": 391922, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1356, "total_fragments": 1360, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseospira navarrensis", "strain": "strain=DSM 15114", "accession": "GCA_009601025.1", "taxid": 140058, "species_taxid": 140058, "relation_to_type": "type", "validated": true, "ani": 81.9336, "matched_fragments": 826, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira marina", "strain": "strain=DSM 15113", "accession": "GCA_014197855.1", "taxid": 140057, "species_taxid": 140057, "relation_to_type": "type", "validated": true, "ani": 80.6454, "matched_fragments": 721, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira marina", "strain": "strain=DSM 15113", "accession": "GCA_008630015.1", "taxid": 140057, "species_taxid": 140057, "relation_to_type": "type", "validated": true, "ani": 80.6002, "matched_fragments": 738, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira marina", "strain": "strain=DSM 15113", "accession": "GCA_014203135.1", "taxid": 140057, "species_taxid": 140057, "relation_to_type": "type", "validated": true, "ani": 80.5994, "matched_fragments": 731, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodospirillum oryzae", "strain": "strain=NBRC 107573", "accession": "GCA_007992075.1", "taxid": 478448, "species_taxid": 478448, "relation_to_type": "type", "validated": true, "ani": 77.3555, "matched_fragments": 294, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibius marinus", "strain": "strain=NBU2595", "accession": "GCA_014925385.1", "taxid": 2762760, "species_taxid": 2762760, "relation_to_type": "type", "validated": true, "ani": 77.3307, "matched_fragments": 366, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea acidiphila", "strain": "strain=MEBiC11861", "accession": "GCA_024662015.1", "taxid": 1862145, "species_taxid": 1862145, "relation_to_type": "type", "validated": true, "ani": 76.5843, "matched_fragments": 186, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 76.4589, "matched_fragments": 395, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidongia dinghuensis", "strain": "strain=CGMCC 1.15725", "accession": "GCA_014643535.1", "taxid": 1867774, "species_taxid": 1867774, "relation_to_type": "type", "validated": true, "ani": 76.1917, "matched_fragments": 312, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 76.1769, "matched_fragments": 316, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acuticoccus mangrovi", "strain": "strain=B2012", "accession": "GCA_016411865.1", "taxid": 2796142, "species_taxid": 2796142, "relation_to_type": "type", "validated": true, "ani": 76.0092, "matched_fragments": 243, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 75.9856, "matched_fragments": 391, "total_fragments": 1360, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014197795.1", "gtdb_species": "s__Rhodospira goensis", "ani": 100.0, "matched_fragments": 1356, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009601025.1", "gtdb_species": "s__Rhodospira navarrensis", "ani": 81.9139, "matched_fragments": 827, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101965.1", "gtdb_species": "s__Rhodospira trueperi", "ani": 81.3945, "matched_fragments": 731, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014197915.1", "gtdb_species": "s__Rhodospira visakhapatnamensis", "ani": 80.8482, "matched_fragments": 755, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014197855.1", "gtdb_species": "s__Rhodospira marina", "ani": 80.6156, "matched_fragments": 727, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014925385.1", "gtdb_species": "s__WHTV01 sp014925385", "ani": 77.3348, "matched_fragments": 365, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Kiloniellaceae;g__WHTV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007992075.1", "gtdb_species": "s__Pararhodospirillum oryzae", "ani": 77.3265, "matched_fragments": 297, "total_fragments": 1360, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Pararhodospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.74, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": 7.5, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Roseospira", "goensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }