{ "type": "genome", "identifier": "GCF_014199405.1", "organism": "Sphingomonas prati", "title": "Sphingomonas prati", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014199405.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025137", "wgs_master": "JACIJR000000000.1", "refseq_category": "na", "taxid": "1843237", "species_taxid": "1843237", "organism_name": "Sphingomonas prati", "infraspecific_name": "strain=DSM 103336", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419940v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014199405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/199/405/GCF_014199405.1_ASM1419940v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3800575", "genome_size_ungapped": "3800286", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014199405.1-RS_2024_09_26", "annotation_date": "2024-09-26", "total_gene_count": "3483", "protein_coding_gene_count": "3394", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas prati" ], "sample_taxid": [ "1843237" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.037 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3800575", "Number of Sequences": "21", "Longest Sequences (bp)": "681687", "N50 (bp)": "420239", "Gap Ratio (%)": "0.007604", "GCcontent (%)": "67.0", "Number of CDSs": "3450", "Average Protein Length": "325.1", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas prati", "strain": "strain=DSM 103336", "accession": "GCA_014199405.1", "taxid": 1843237, "species_taxid": 1843237, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1255, "total_fragments": 1255, "ani_threshold": 95, 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