{ "type": "genome", "identifier": "GCF_014199435.1", "organism": "Sphingobium subterraneum", "title": "Sphingobium subterraneum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014199435.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025072", "wgs_master": "JACIJP000000000.1", "refseq_category": "reference genome", "taxid": "627688", "species_taxid": "627688", "organism_name": "Sphingobium subterraneum", "infraspecific_name": "strain=DSM 102255", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419943v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014199435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/199/435/GCF_014199435.1_ASM1419943v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3748342", "genome_size_ungapped": "3748342", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014199435.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3576", "protein_coding_gene_count": "3482", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobium subterraneum" ], "sample_taxid": [ "627688" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"strain": "strain=P25", "accession": "GCA_000445065.1", "taxid": 538379, "species_taxid": 538379, "relation_to_type": "type", "validated": true, "ani": 79.3988, "matched_fragments": 341, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium yanoikuyae", "strain": "strain=ATCC 51230", "accession": "GCA_000315525.1", "taxid": 13690, "species_taxid": 13690, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2221, "matched_fragments": 413, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fontiphilum", "strain": "strain=DSM 29348", "accession": "GCA_014196635.1", "taxid": 944425, "species_taxid": 944425, "relation_to_type": "type", "validated": true, "ani": 79.1885, "matched_fragments": 371, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium chlorophenolicum", "strain": "strain=NBRC 16172", "accession": 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