{ "type": "genome", "identifier": "GCF_014199985.1", "organism": "Methylorubrum rhodesianum", "title": "Methylorubrum rhodesianum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014199985.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908535", "wgs_master": "JACHOS000000000.1", "refseq_category": "reference genome", "taxid": "29427", "species_taxid": "29427", "organism_name": "Methylorubrum rhodesianum", "infraspecific_name": "strain=DSM 5687", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1419998v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014199985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/199/985/GCF_014199985.1_ASM1419998v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5873985", "genome_size_ungapped": "5873883", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014199985.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "5506", "protein_coding_gene_count": "5350", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylorubrum rhodesianum" ], "sample_taxid": [ "29427" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Methylorubrum zatmanii", "strain": "strain=LMG 6087", "accession": "GCA_014845115.1", "taxid": 29429, "species_taxid": 29429, "relation_to_type": "type", "validated": true, "ani": 87.6783, "matched_fragments": 1221, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum rhodinum", "strain": "strain=DSM 2163", "accession": "GCA_014199935.1", "taxid": 29428, "species_taxid": 29428, "relation_to_type": "type", "validated": true, "ani": 85.3734, "matched_fragments": 1236, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum salsuginis", "strain": "strain=CGMCC 1.6474", "accession": "GCA_900114375.1", "taxid": 414703, "species_taxid": 414703, "relation_to_type": "type", "validated": true, "ani": 85.2816, "matched_fragments": 1194, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum suomiense", "strain": "strain=DSM 14458", "accession": "GCA_022179765.1", "taxid": 144191, "species_taxid": 144191, "relation_to_type": "type", "validated": true, "ani": 84.7196, "matched_fragments": 1209, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 84.0146, "matched_fragments": 1106, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium soli", "strain": "strain=KCTC 22810", "accession": "GCA_022179555.1", "taxid": 553447, "species_taxid": 553447, "relation_to_type": "type", "validated": true, "ani": 81.3622, "matched_fragments": 766, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": 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2579971, "species_taxid": 2579971, "relation_to_type": "type", "validated": true, "ani": 75.8537, "matched_fragments": 297, "total_fragments": 1933, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014199985.1", "gtdb_species": "s__Methylobacterium rhodesianum", "ani": 100.0, "matched_fragments": 1931, "total_fragments": 1933, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "98.11", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_002355515.1", "gtdb_species": "s__Methylobacterium populi_A", "ani": 92.9745, "matched_fragments": 1601, "total_fragments": 1933, "gtdb_taxonomy": 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