{ "type": "genome", "identifier": "GCF_014200015.1", "organism": "Aminobacter niigataensis", "title": "Aminobacter niigataensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014200015.1", "bioproject": "PRJNA224116", "biosample": "SAMN13172840", "wgs_master": "JACHOT000000000.1", "refseq_category": "na", "taxid": "83265", "species_taxid": "83265", "organism_name": "Aminobacter niigataensis", "infraspecific_name": "strain=DSM 7050", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420001v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014200015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/200/015/GCF_014200015.1_ASM1420001v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5287613", "genome_size_ungapped": "5287613", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014200015.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5217", "protein_coding_gene_count": "5114", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Aminobacter niigataensis" ], "sample_taxid": [ "83265" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.463 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5287613", "Number of Sequences": "26", "Longest Sequences (bp)": "1948730", "N50 (bp)": "468746", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.4", "Number of CDSs": "5170", "Average Protein Length": "302.1", "Coding Ratio (%)": "88.6", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aminobacter niigataensis", "strain": "strain=DSM 7050", "accession": "GCA_014200015.1", "taxid": 83265, "species_taxid": 83265, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1749, "total_fragments": 1749, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aminobacter aganoensis", "strain": "strain=DSM 7051", "accession": "GCA_014206975.1", "taxid": 83264, "species_taxid": 83264, "relation_to_type": "type", "validated": true, "ani": 90.9958, "matched_fragments": 1422, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aminovorans", "strain": "strain=DSM 7048", "accession": "GCA_004341645.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 86.9234, "matched_fragments": 1303, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter ciceronei", "strain": "strain=DSM 17455", "accession": "GCA_014138635.1", "taxid": 150723, "species_taxid": 150723, "relation_to_type": "type", "validated": true, "ani": 86.8496, "matched_fragments": 1294, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 80.8922, "matched_fragments": 870, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 79.9837, "matched_fragments": 705, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor alexandrii", "strain": "strain=Z3-1", "accession": "GCA_004000215.1", "taxid": 2448161, "species_taxid": 2448161, "relation_to_type": "type", "validated": true, "ani": 79.1444, "matched_fragments": 639, "total_fragments": 1749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor arenosus", "strain": "strain=CAU 1489", "accession": "GCA_009742725.1", "taxid": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900445235.1", "gtdb_species": "s__Aminobacter aminovorans", "ani": 86.836, "matched_fragments": 1333, "total_fragments": 1749, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014138625.1", "gtdb_species": "s__Aminobacter ciceronei", "ani": 86.8031, "matched_fragments": 1294, "total_fragments": 1749, "gtdb_taxonomy": 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