{ "type": "genome", "identifier": "GCF_014200045.1", "organism": "Rhizorhapis suberifaciens", "title": "Rhizorhapis suberifaciens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014200045.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908464", "wgs_master": "JACHOV000000000.1", "refseq_category": "reference genome", "taxid": "13656", "species_taxid": "13656", "organism_name": "Rhizorhapis suberifaciens", "infraspecific_name": "strain=DSM 7465", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420004v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014200045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/200/045/GCF_014200045.1_ASM1420004v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3360228", "genome_size_ungapped": "3360134", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014200045.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3283", "protein_coding_gene_count": "3190", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizorhapis suberifaciens" ], "sample_taxid": [ "13656" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"strain": "strain=CCM 7327", "accession": "GCA_014636045.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 77.8835, "matched_fragments": 259, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium wenxiniae", "strain": "strain=CGMCC 1.7748", "accession": "GCA_007830065.1", "taxid": 595605, "species_taxid": 595605, "relation_to_type": "type", "validated": true, "ani": 77.8679, "matched_fragments": 266, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium yanoikuyae", "strain": "strain=ATCC 51230", "accession": "GCA_000315525.1", "taxid": 13690, "species_taxid": 13690, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8213, "matched_fragments": 263, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium subterraneum", "strain": "strain=DSM 102255", "accession": "GCA_014199435.1", "taxid": 627688, "species_taxid": 627688, "relation_to_type": "type", "validated": true, "ani": 77.7376, "matched_fragments": 194, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", "strain": "strain=K2R01-6", "accession": "GCA_003590775.1", "taxid": 2320861, "species_taxid": 2320861, "relation_to_type": "type", "validated": true, "ani": 77.7241, "matched_fragments": 181, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium jiangsuense", "strain": "strain=DSM 26189", "accession": "GCA_014196495.1", "taxid": 870476, "species_taxid": 870476, "relation_to_type": "type", "validated": true, "ani": 77.6541, "matched_fragments": 267, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium bisphenolivorans", "strain": "strain=YL23", "accession": "GCA_000412635.1", "taxid": 1335760, "species_taxid": 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1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 76.906, "matched_fragments": 150, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteripontixanthobacter maritimus", "strain": "strain=HME9302", "accession": "GCA_003340475.1", "taxid": 2161824, "species_taxid": 2161824, "relation_to_type": "type", "validated": true, "ani": 76.8172, "matched_fragments": 69, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 76.8078, "matched_fragments": 107, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus bisphenolivorans", "strain": "strain=H4", "accession": "GCA_001634625.1", "taxid": 1783232, "species_taxid": 1783232, "relation_to_type": "type", "validated": true, "ani": 76.7313, "matched_fragments": 116, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gei", "strain": "strain=ZFGT-11", "accession": "GCA_004792685.1", "taxid": 1395960, "species_taxid": 1395960, "relation_to_type": "type", "validated": true, "ani": 76.6059, "matched_fragments": 154, "total_fragments": 1102, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014200045.1", "gtdb_species": "s__Rhizorhapis suberifaciens", "ani": 100.0, "matched_fragments": 1102, "total_fragments": 1102, "gtdb_taxonomy": 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