{ "type": "genome", "identifier": "GCF_014200305.1", "organism": "Neomicrococcus lactis", "title": "Neomicrococcus lactis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014200305.1", "bioproject": "PRJNA224116", "biosample": "SAMN05877814", "wgs_master": "JACHBL000000000.1", "refseq_category": "reference genome", "taxid": "732241", "species_taxid": "732241", "organism_name": "Neomicrococcus lactis", "infraspecific_name": "strain=DSM 23694", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420030v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014200305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/200/305/GCF_014200305.1_ASM1420030v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2703351", "genome_size_ungapped": "2703351", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014200305.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "2458", "protein_coding_gene_count": "2379", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Neomicrococcus lactis" ], "sample_taxid": [ "732241" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Hyderabad" ], "sample_host_location_id": [], "data_size": "0.765 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2703351", "Number of Sequences": "2", "Longest Sequences (bp)": "2656226", "N50 (bp)": "2656226", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.6", "Number of CDSs": "2452", "Average Protein Length": "327.0", "Coding Ratio (%)": "89.0", "Number of rRNAs": "9", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neomicrococcus lactis", "strain": "strain=DSM 23694", "accession": "GCA_014200305.1", "taxid": 732241, "species_taxid": 732241, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 899, "total_fragments": 900, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neomicrococcus aestuarii", "strain": "strain=DSM 105783", "accession": "GCA_014201135.1", "taxid": 556325, "species_taxid": 556325, "relation_to_type": "type", "validated": true, "ani": 83.4914, "matched_fragments": 600, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=ATCC 49919", "accession": "GCA_021919345.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1751, "matched_fragments": 133, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.0889, "matched_fragments": 120, "total_fragments": 900, "ani_threshold": 95, "status": 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"Paeniglutamicibacter psychrophenolicus", "strain": "strain=DSM 15454", "accession": "GCA_017876575.1", "taxid": 257454, "species_taxid": 257454, "relation_to_type": "type", "validated": true, "ani": 77.8962, "matched_fragments": 169, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter mishrai", "strain": "strain=S5-52", "accession": "GCA_012221945.1", "taxid": 1775880, "species_taxid": 1775880, "relation_to_type": "type", "validated": true, "ani": 77.7899, "matched_fragments": 146, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.7439, "matched_fragments": 117, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter terrestris", "strain": "strain=ANT13_2", "accession": "GCA_012271785.1", "taxid": 2723403, "species_taxid": 2723403, "relation_to_type": "type", "validated": true, "ani": 77.6332, "matched_fragments": 138, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 77.4819, "matched_fragments": 129, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter luteolus", "strain": "strain=DSM 13067", "accession": "GCA_008973725.1", "taxid": 98672, "species_taxid": 98672, "relation_to_type": "type", "validated": true, "ani": 77.4604, "matched_fragments": 130, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galactobacter valiniphilus", "strain": "strain=JZ R-35", "accession": "GCA_003575975.1", "taxid": 2676122, "species_taxid": 2676122, "relation_to_type": "type", "validated": true, "ani": 77.4167, "matched_fragments": 142, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.3657, "matched_fragments": 117, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter psychrolactophilus", "strain": "strain=B7", "accession": "GCA_003219795.1", "taxid": 92442, "species_taxid": 92442, "relation_to_type": "type", "validated": true, "ani": 77.3605, "matched_fragments": 116, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter uratoxydans", "strain": "strain=NBRC 15515", "accession": "GCA_006539925.1", "taxid": 43667, "species_taxid": 43667, "relation_to_type": "type", "validated": true, "ani": 77.3244, "matched_fragments": 143, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter koreensis", "strain": "strain=DSM 16760", "accession": "GCA_009193255.1", "taxid": 199136, "species_taxid": 199136, "relation_to_type": "type", "validated": true, "ani": 77.2403, "matched_fragments": 134, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter luteolus", "strain": "strain=NBRC 107841", "accession": "GCA_001552075.1", "taxid": 98672, "species_taxid": 98672, "relation_to_type": "type", "validated": true, "ani": 77.178, "matched_fragments": 131, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galactobacter caseinivorans", "strain": "strain=JZ R-183", "accession": "GCA_003640665.1", "taxid": 2676123, "species_taxid": 2676123, "relation_to_type": "type", "validated": true, "ani": 77.1688, "matched_fragments": 127, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter gandavensis", "strain": "strain=JCM 13316", "accession": "GCA_009192735.1", "taxid": 169960, "species_taxid": 169960, "relation_to_type": "type", "validated": true, "ani": 77.1465, "matched_fragments": 119, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas notoginsengisoli", "strain": "strain=KCTC 29237", "accession": "GCA_021554725.1", "taxid": 1457311, "species_taxid": 1457311, "relation_to_type": "type", "validated": true, "ani": 76.9101, "matched_fragments": 106, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014200305.1", "gtdb_species": "s__Neomicrococcus lactis", "ani": 100.0, "matched_fragments": 899, "total_fragments": 900, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Neomicrococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014201135.1", "gtdb_species": "s__Neomicrococcus aestuarii", "ani": 83.4914, "matched_fragments": 600, "total_fragments": 900, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Neomicrococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.24", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000197735.1", "gtdb_species": "s__Glutamicibacter arilaitensis", "ani": 78.0763, "matched_fragments": 139, 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