{ "type": "genome", "identifier": "GCF_014201115.1", "organism": "Nocardiopsis metallicus", "title": "Nocardiopsis metallicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014201115.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908388", "wgs_master": "JACHDO000000000.1", "refseq_category": "reference genome", "taxid": "179819", "species_taxid": "179819", "organism_name": "Nocardiopsis metallicus", "infraspecific_name": "strain=DSM 44598", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420111v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014201115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/201/115/GCF_014201115.1_ASM1420111v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7776555", "genome_size_ungapped": "7776555", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014201115.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6914", "protein_coding_gene_count": "6713", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis metallicus" ], "sample_taxid": [ "179819" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "2.107 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7776555", "Number of Sequences": "2", "Longest Sequences (bp)": "7747323", "N50 (bp)": "7747323", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.8", "Number of CDSs": "7055", "Average Protein Length": "315.8", "Coding Ratio (%)": "86.0", "Number of rRNAs": "15", "Number of tRNAs": "70", "Number of CRISPRs": "11" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis metallicus", "strain": "strain=DSM 44598", "accession": "GCA_014201115.1", "taxid": 179819, "species_taxid": 179819, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2591, "total_fragments": 2591, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 95.4964, "matched_fragments": 2105, "total_fragments": 2591, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis valliformis", "strain": "strain=DSM 45023", "accession": "GCA_000340985.1", "taxid": 239974, "species_taxid": 239974, "relation_to_type": "type", "validated": true, "ani": 94.8253, "matched_fragments": 1911, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis ganjiahuensis", "strain": "strain=DSM 45031", "accession": "GCA_000341085.1", "taxid": 239984, "species_taxid": 239984, "relation_to_type": "type", "validated": true, "ani": 89.3253, "matched_fragments": 1752, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis terrae", "strain": "strain=DSM 45157", "accession": "GCA_014874035.1", "taxid": 372655, "species_taxid": 372655, "relation_to_type": "type", "validated": true, "ani": 87.6533, "matched_fragments": 1597, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis prasina", "strain": "strain=DSM 43845", "accession": "GCA_000341265.1", "taxid": 2015, "species_taxid": 2015, "relation_to_type": "type", "validated": true, "ani": 87.1891, "matched_fragments": 1453, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis listeri", "strain": "strain=NBRC 13360", "accession": "GCA_001570765.1", "taxid": 53440, "species_taxid": 53440, "relation_to_type": "type", "validated": true, "ani": 84.3413, "matched_fragments": 1309, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alkaliphila", "strain": "strain=YIM 80379", "accession": "GCA_000341005.1", "taxid": 225762, "species_taxid": 225762, "relation_to_type": "type", "validated": true, "ani": 83.6278, "matched_fragments": 1195, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 83.5102, "matched_fragments": 1356, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis aegyptia", "strain": "strain=DSM 44442", "accession": "GCA_013410755.1", "taxid": 220378, "species_taxid": 220378, "relation_to_type": "type", "validated": true, "ani": 83.1124, "matched_fragments": 1368, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis lucentensis", "strain": "strain=DSM 44048", "accession": "GCA_000341125.1", "taxid": 53441, "species_taxid": 53441, "relation_to_type": "type", "validated": true, "ani": 82.8174, "matched_fragments": 1050, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis salina", "strain": "strain=YIM 90010", "accession": "GCA_000341025.1", "taxid": 245836, "species_taxid": 245836, "relation_to_type": "type", "validated": true, "ani": 81.8206, "matched_fragments": 1054, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis kunsanensis", "strain": "strain=DSM 44524", "accession": "GCA_000340965.1", "taxid": 141693, "species_taxid": 141693, "relation_to_type": "type", "validated": true, "ani": 81.3466, "matched_fragments": 1028, "total_fragments": 2591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, 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