{ "type": "genome", "identifier": "GCF_014201465.1", "organism": "Anoxybacteroides tepidamans", "title": "Anoxybacteroides tepidamans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014201465.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908515", "wgs_master": "JACHEP000000000.1", "refseq_category": "reference genome", "taxid": "265948", "species_taxid": "265948", "organism_name": "Anoxybacteroides tepidamans", "infraspecific_name": "strain=DSM 16325", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420146v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014201465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/201/465/GCF_014201465.1_ASM1420146v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3386024", "genome_size_ungapped": "3385729", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014201465.1-RS_2024_12_29", "annotation_date": "2024-12-29", "total_gene_count": "3498", "protein_coding_gene_count": "3299", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Anoxybacteroides tepidamans" ], "sample_taxid": [ "265948" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "0.959 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3386024", "Number of Sequences": "54", "Longest Sequences (bp)": "557253", "N50 (bp)": "117962", "Gap Ratio (%)": "0.008712", "GCcontent (%)": "42.5", "Number of CDSs": "3399", "Average Protein Length": "285.5", "Coding Ratio (%)": "86.0", "Number of rRNAs": "2", "Number of tRNAs": "70", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anoxybacillus tepidamans", "strain": "strain=DSM 16325", "accession": "GCA_014201465.1", "taxid": 265948, "species_taxid": 265948, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1099, "total_fragments": 1104, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Anoxybacillus amylolyticus", "strain": "strain=DSM 15939", "accession": "GCA_001634285.1", "taxid": 294699, "species_taxid": 294699, "relation_to_type": "type", "validated": true, "ani": 83.1868, "matched_fragments": 666, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus voinovskiensis", "strain": "strain=DSM 17075", "accession": "GCA_014196205.1", "taxid": 230470, "species_taxid": 230470, "relation_to_type": "type", "validated": true, "ani": 82.7249, "matched_fragments": 664, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus voinovskiensis", "strain": "strain=JCM 12111", "accession": "GCA_014646615.1", "taxid": 230470, "species_taxid": 230470, "relation_to_type": "type", "validated": true, "ani": 82.5918, "matched_fragments": 676, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus thermarum", "strain": "strain=AF/04", "accession": "GCA_000836725.1", "taxid": 404937, "species_taxid": 404937, "relation_to_type": "type", "validated": true, "ani": 79.7365, "matched_fragments": 310, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus caldiproteolyticus", "strain": "strain=DSM 15730", "accession": "GCA_013761245.1", "taxid": 247480, "species_taxid": 247480, "relation_to_type": "type", "validated": true, "ani": 79.5887, "matched_fragments": 478, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus gonensis", "strain": "strain=G2", "accession": "GCA_001187595.1", "taxid": 198467, "species_taxid": 198467, "relation_to_type": "suspected-type", "validated": true, "ani": 79.292, "matched_fragments": 314, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus gonensis", "strain": "strain=G2", "accession": "GCA_000770375.1", "taxid": 198467, "species_taxid": 198467, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2427, "matched_fragments": 305, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus dafuensis", "strain": "strain=FJAT-25496", "accession": "GCA_007995155.1", "taxid": 1742359, "species_taxid": 1742359, "relation_to_type": "type", "validated": true, "ani": 76.803, "matched_fragments": 53, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 76.1899, "matched_fragments": 51, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014201465.1", "gtdb_species": "s__Anoxybacillus_A tepidamans", "ani": 100.0, "matched_fragments": 1099, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001634285.1", "gtdb_species": "s__Anoxybacillus_A amylolyticus", "ani": 83.2463, "matched_fragments": 663, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196205.1", "gtdb_species": "s__Anoxybacillus_A voinovskiensis", "ani": 82.747, "matched_fragments": 663, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000620165.1", "gtdb_species": "s__Anoxybacillus_A tepidamans_A", "ani": 80.4503, "matched_fragments": 577, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000836725.1", "gtdb_species": "s__Anoxybacillus thermarum", "ani": 79.708, "matched_fragments": 311, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013761245.1", "gtdb_species": "s__Anoxybacillus_C caldiproteolyticus", "ani": 79.5671, "matched_fragments": 480, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002243705.1", "gtdb_species": "s__Anoxybacillus flavithermus", "ani": 79.5043, "matched_fragments": 319, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.37", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002197485.1", "gtdb_species": "s__Anoxybacillus flavithermus_G", "ani": 79.4427, "matched_fragments": 316, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "95.08", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.76", "num_clustered_genomes": 28, "status": "-" }, { "accession": "GCF_002742685.1", "gtdb_species": "s__Anoxybacillus flavithermus_E", "ani": 79.3608, "matched_fragments": 293, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001187595.1", "gtdb_species": "s__Anoxybacillus gonensis", "ani": 79.3049, "matched_fragments": 314, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "96.49", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_014196195.1", "gtdb_species": "s__Anoxybacillus_A rupiensis", "ani": 79.2271, "matched_fragments": 508, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Anoxybacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_007995155.1", "gtdb_species": "s__Cytobacillus dafuensis", "ani": 76.803, "matched_fragments": 53, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Anoxybacteroides", "tepidamans" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }