{ "tc_result": [ { "organism_name": "Pseudorhizobium flavum", "strain": "strain=DSM 102134", "accession": "GCA_014201495.1", "taxid": 1335061, "species_taxid": 1335061, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1522, "total_fragments": 1524, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudorhizobium flavum", "strain": "strain=YW14", "accession": "GCA_902502825.2", "taxid": 1335061, "species_taxid": 1335061, "relation_to_type": "type", "validated": true, "ani": 99.9984, "matched_fragments": 1521, "total_fragments": 1524, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudorhizobium flavum", "strain": "strain=YW14", "accession": "GCA_002000045.1", "taxid": 1335061, "species_taxid": 1335061, "relation_to_type": "type", "validated": true, "ani": 99.9608, "matched_fragments": 1501, "total_fragments": 1524, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudorhizobium halotolerans", "strain": "strain=AB21", "accession": "GCA_902153235.3", "taxid": 1233081, "species_taxid": 1233081, "relation_to_type": "type", "validated": true, "ani": 96.0198, "matched_fragments": 1240, "total_fragments": 1524, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudorhizobium banfieldiae", "strain": "strain=NT-26", "accession": "GCA_000967425.1", "taxid": 1125847, "species_taxid": 1125847, "relation_to_type": "type", "validated": true, "ani": 95.2628, "matched_fragments": 1211, "total_fragments": 1524, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 79.5492, "matched_fragments": 566, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 79.5078, "matched_fragments": 545, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 79.3855, "matched_fragments": 610, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, "relation_to_type": "type", "validated": true, "ani": 79.3735, "matched_fragments": 520, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium leguminum", "strain": "strain=MOPV5", "accession": "GCA_015704895.1", "taxid": 2792015, "species_taxid": 2792015, "relation_to_type": "type", "validated": true, "ani": 78.5895, "matched_fragments": 490, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902502825.2", "gtdb_species": "s__Pseudorhizobium flavum", "ani": 99.9984, "matched_fragments": 1521, "total_fragments": 1524, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.75", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.77", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCF_902153245.2", "gtdb_species": "s__Pseudorhizobium endolithicum", "ani": 83.4275, "matched_fragments": 926, "total_fragments": 1524, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000722615.1", "gtdb_species": "s__Pseudorhizobium pelagicum", "ani": 81.3465, "matched_fragments": 840, "total_fragments": 1524, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.63", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900177415.1", "gtdb_species": "s__Neorhizobium oryzae_A", "ani": 80.4342, "matched_fragments": 726, "total_fragments": 1524, "gtdb_taxonomy": 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