{ "type": "genome", "identifier": "GCF_014201675.1", "organism": "Oceanithermus desulfurans", "title": "Oceanithermus desulfurans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014201675.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908313", "wgs_master": "JACHEZ000000000.1", "refseq_category": "na", "taxid": "227924", "species_taxid": "227924", "organism_name": "Oceanithermus desulfurans", "infraspecific_name": "strain=DSM 15757", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420167v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014201675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/201/675/GCF_014201675.1_ASM1420167v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2430953", "genome_size_ungapped": "2430953", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014201675.1-RS_2024_09_26", "annotation_date": "2024-09-26", "total_gene_count": "2426", "protein_coding_gene_count": "2358", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanithermus desulfurans" ], "sample_taxid": [ "227924" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.659 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2430953", "Number of Sequences": "18", "Longest Sequences (bp)": "439565", "N50 (bp)": "305053", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.6", "Number of CDSs": "2383", "Average Protein Length": "314.5", "Coding Ratio (%)": "92.5", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanithermus desulfurans", "strain": "strain=DSM 15757", "accession": "GCA_014201675.1", "taxid": 227924, "species_taxid": 227924, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 800, "total_fragments": 801, 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"organism_name": "Calidithermus terrae", "strain": "strain=DSM 26712", "accession": "GCA_003574345.1", "taxid": 1408545, "species_taxid": 1408545, "relation_to_type": "type", "validated": true, "ani": 77.4631, "matched_fragments": 302, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus terrestris", "strain": "strain=SDU3-2", "accession": "GCA_009377345.1", "taxid": 2651870, "species_taxid": 2651870, "relation_to_type": "type", "validated": true, "ani": 76.2318, "matched_fragments": 104, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus metalli", "strain": "strain=DSM 27521", "accession": "GCA_014201805.1", "taxid": 1141878, "species_taxid": 1141878, "relation_to_type": "type", "validated": true, "ani": 75.9412, "matched_fragments": 125, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus budaensis", "strain": 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