{ "type": "genome", "identifier": "GCF_014201805.1", "organism": "Deinococcus metalli", "title": "Deinococcus metalli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014201805.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908283", "wgs_master": "JACHFK000000000.1", "refseq_category": "na", "taxid": "1141878", "species_taxid": "1141878", "organism_name": "Deinococcus metalli", "infraspecific_name": "strain=DSM 27521", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420180v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014201805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/201/805/GCF_014201805.1_ASM1420180v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4926245", "genome_size_ungapped": "4926245", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014201805.1-RS_2024_09_26", "annotation_date": "2024-09-26", "total_gene_count": "4782", "protein_coding_gene_count": "4678", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus metalli" ], "sample_taxid": [ "1141878" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.331 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4926245", "Number of Sequences": "37", "Longest Sequences (bp)": "1058456", "N50 (bp)": "338599", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.1", "Number of CDSs": "4746", "Average Protein Length": "310.4", "Coding Ratio (%)": "89.7", "Number of rRNAs": "2", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus metalli", "strain": "strain=DSM 27521", "accession": "GCA_014201805.1", "taxid": 1141878, "species_taxid": 1141878, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1616, "total_fragments": 1621, 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"organism_name": "Deinococcus arenae", "strain": "strain=JCM 31047", "accession": "GCA_014647995.1", "taxid": 1452751, "species_taxid": 1452751, "relation_to_type": "type", "validated": true, "ani": 81.7676, "matched_fragments": 808, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus knuensis", "strain": "strain=JCM 31406", "accession": "GCA_014648155.1", "taxid": 1837380, "species_taxid": 1837380, "relation_to_type": "type", "validated": true, "ani": 81.7188, "matched_fragments": 843, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus seoulensis", "strain": "strain=JCM 31404", "accession": "GCA_014648115.1", "taxid": 1837379, "species_taxid": 1837379, "relation_to_type": "type", "validated": true, "ani": 81.6937, "matched_fragments": 836, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus daejeonensis", "strain": "strain=JCM 16918", "accession": "GCA_014647175.1", "taxid": 1007098, "species_taxid": 1007098, "relation_to_type": "type", "validated": true, "ani": 81.5711, "matched_fragments": 809, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus soli (ex Cha et al. 2016)", "strain": "strain=N5", "accession": "GCA_001007995.1", "taxid": 1309411, "species_taxid": 1309411, "relation_to_type": "type", "validated": true, "ani": 81.5604, "matched_fragments": 728, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus xianganensis", "strain": "strain=Y35", "accession": "GCA_009834985.1", "taxid": 1507289, "species_taxid": 1507289, "relation_to_type": "type", "validated": true, "ani": 81.5378, "matched_fragments": 782, "total_fragments": 1621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus saudiensis", "strain": "strain=CGMCC 1.15089", "accession": 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