{ "type": "genome", "identifier": "GCF_014202275.1", "organism": "Rhabdobacter roseus", "title": "Rhabdobacter roseus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014202275.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908400", "wgs_master": "JACHGF000000000.1", "refseq_category": "reference genome", "taxid": "1655419", "species_taxid": "1655419", "organism_name": "Rhabdobacter roseus", "infraspecific_name": "strain=DSM 105074", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420227v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014202275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/202/275/GCF_014202275.1_ASM1420227v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6917964", "genome_size_ungapped": "6917092", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014202275.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5712", "protein_coding_gene_count": "5650", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhabdobacter roseus" ], "sample_taxid": [ "1655419" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.958 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6917964", "Number of Sequences": "27", "Longest Sequences (bp)": "1198712", "N50 (bp)": "568462", "Gap Ratio (%)": "0.012605", "GCcontent (%)": "54.0", "Number of CDSs": "5649", "Average Protein Length": "358.3", "Coding Ratio (%)": "87.8", "Number of rRNAs": "2", "Number of tRNAs": "38", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdobacter roseus", "strain": "strain=DSM 105074", "accession": "GCA_014202275.1", "taxid": 1655419, "species_taxid": 1655419, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2292, "total_fragments": 2292, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Telluribacter humicola", "strain": "strain=KCTC 42819", "accession": "GCA_017355935.1", "taxid": 1720261, "species_taxid": 1720261, "relation_to_type": "type", "validated": true, "ani": 76.9936, "matched_fragments": 418, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter arcticus", "strain": "strain=DSM 102865", "accession": "GCA_011762185.1", "taxid": 1078754, "species_taxid": 1078754, "relation_to_type": "type", "validated": true, "ani": 76.7888, "matched_fragments": 55, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrotolerans", "strain": "strain=AR-3-6", "accession": "GCA_004349265.1", "taxid": 2541721, "species_taxid": 2541721, "relation_to_type": "type", "validated": true, "ani": 76.5856, "matched_fragments": 69, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter fermentans", "strain": "strain=DSM 18053", "accession": "GCA_000023125.1", "taxid": 94254, "species_taxid": 94254, "relation_to_type": "type", "validated": true, "ani": 76.3396, "matched_fragments": 208, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter jiangsuensis", "strain": "strain=DSM 29057", "accession": "GCA_003014695.1", "taxid": 1591085, "species_taxid": 1591085, "relation_to_type": "type", "validated": true, "ani": 76.2927, "matched_fragments": 175, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter bucti", "strain": "strain=QTA69", "accession": "GCA_005869225.1", "taxid": 2572203, "species_taxid": 2572203, "relation_to_type": "type", "validated": true, "ani": 76.2401, "matched_fragments": 110, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter endophyticus", "strain": "strain=CGMCC 1.15288", "accession": "GCA_014641595.1", "taxid": 1749036, "species_taxid": 1749036, "relation_to_type": "type", "validated": true, "ani": 76.1377, "matched_fragments": 142, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella knui", "strain": "strain=KCTC42998", "accession": "GCA_003858645.1", "taxid": 2025310, "species_taxid": 2025310, "relation_to_type": "type", "validated": true, "ani": 76.1087, "matched_fragments": 152, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sandarakinus", "strain": "strain=Q3-56", "accession": "GCA_016894445.1", "taxid": 2747268, "species_taxid": 2747268, "relation_to_type": "type", "validated": true, "ani": 76.0888, "matched_fragments": 130, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter luticola", "strain": "strain=T17", "accession": "GCA_005860805.1", "taxid": 1979387, "species_taxid": 1979387, "relation_to_type": "type", "validated": true, "ani": 76.0548, "matched_fragments": 139, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter beijingensis", "strain": "strain=DSM 21582", "accession": "GCA_000382205.1", "taxid": 365489, "species_taxid": 365489, "relation_to_type": "type", "validated": true, "ani": 76.0174, "matched_fragments": 201, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella rubiginis", "strain": "strain=HMF5335", "accession": "GCA_017353185.1", "taxid": 2817060, "species_taxid": 2817060, "relation_to_type": "type", "validated": true, "ani": 75.8757, "matched_fragments": 131, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella punicea", "strain": "strain=ZZJ9", "accession": "GCA_003334855.1", "taxid": 2315727, "species_taxid": 2315727, "relation_to_type": "type", "validated": true, "ani": 75.8565, "matched_fragments": 172, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella aquatilis", "strain": "strain=HMF5036", "accession": "GCA_017353255.1", "taxid": 2817059, "species_taxid": 2817059, "relation_to_type": "type", "validated": true, "ani": 75.8494, "matched_fragments": 153, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella arboricola", "strain": "strain=DSM 21851", "accession": "GCA_003259745.1", "taxid": 643671, "species_taxid": 643671, "relation_to_type": "type", "validated": true, "ani": 75.8046, "matched_fragments": 185, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 75.7631, "matched_fragments": 100, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter chinhatensis", "strain": "strain=LP51", "accession": "GCA_900113285.1", "taxid": 1436961, "species_taxid": 1436961, "relation_to_type": "type", "validated": true, "ani": 75.698, "matched_fragments": 71, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 75.6839, "matched_fragments": 128, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter mangrovi", "strain": "strain=HB172049", "accession": "GCA_006385705.1", "taxid": 2589816, "species_taxid": 2589816, "relation_to_type": "type", "validated": true, "ani": 75.6712, "matched_fragments": 54, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Runella aurantiaca", "strain": "strain=YX9", "accession": "GCA_003339505.1", "taxid": 2282308, "species_taxid": 2282308, "relation_to_type": "type", "validated": true, "ani": 75.6459, "matched_fragments": 96, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dawidia soli", "strain": "strain=PWU37", "accession": "GCA_018598185.1", "taxid": 2782352, "species_taxid": 2782352, "relation_to_type": "type", "validated": true, "ani": 75.5895, "matched_fragments": 55, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cesiribacter andamanensis", "strain": "strain=AMV16", "accession": "GCA_000348925.1", "taxid": 649507, "species_taxid": 649507, "relation_to_type": "type", "validated": true, "ani": 75.4743, "matched_fragments": 61, "total_fragments": 2292, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014202275.1", "gtdb_species": "s__Rhabdobacter roseus", "ani": 100.0, "matched_fragments": 2292, "total_fragments": 2292, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Rhabdobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_017355935.1", "gtdb_species": "s__Telluribacter humicola", "ani": 76.9936, "matched_fragments": 418, "total_fragments": 2292, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Telluribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011762185.1", "gtdb_species": "s__Dyadobacter arcticus", "ani": 76.7888, "matched_fragments": 55, "total_fragments": 2292, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004349265.1", "gtdb_species": "s__Dyadobacter psychrotolerans", "ani": 76.5856, "matched_fragments": 69, "total_fragments": 2292, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009801115.1", "gtdb_species": "s__Dyadobacter 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