{ "type": "genome", "identifier": "GCF_014202315.1", "organism": "Thermocatellispora tengchongensis", "title": "Thermocatellispora tengchongensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014202315.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908272", "wgs_master": "JACHGN000000000.1", "refseq_category": "reference genome", "taxid": "1073253", "species_taxid": "1073253", "organism_name": "Thermocatellispora tengchongensis", "infraspecific_name": "strain=DSM 45615", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420231v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014202315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/202/315/GCF_014202315.1_ASM1420231v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "11651000", "genome_size_ungapped": "11649328", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014202315.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "10225", "protein_coding_gene_count": "10015", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermocatellispora tengchongensis" ], "sample_taxid": [ "1073253" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "3.089 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.07, "contamination": 10.53, "strain_heterogeneity": 16.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "11651000", "Number of Sequences": "63", "Longest Sequences (bp)": "704634", "N50 (bp)": "369260", "Gap Ratio (%)": "0.014351", "GCcontent (%)": "72.6", "Number of CDSs": "10370", "Average Protein Length": "332.0", "Coding Ratio (%)": "88.7", "Number of rRNAs": "1", "Number of tRNAs": "92", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spongiactinospora gelatinilytica", "strain": "strain=7K107", "accession": "GCA_003236385.1", "taxid": 2666298, 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"type", "validated": true, "ani": 80.6898, "matched_fragments": 1590, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora longispora", "strain": "strain=NBRC 13918", "accession": "GCA_016863135.1", "taxid": 28887, "species_taxid": 28887, "relation_to_type": "type", "validated": true, "ani": 80.6269, "matched_fragments": 1600, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 80.6207, "matched_fragments": 1076, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora rosea", "strain": "strain=JCM 3166", "accession": "GCA_014648175.1", "taxid": 35762, "species_taxid": 35762, "relation_to_type": "type", "validated": true, "ani": 80.5822, "matched_fragments": 1533, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora rosea", "strain": "strain=NBRC 15558", "accession": "GCA_016863155.1", "taxid": 35762, "species_taxid": 35762, "relation_to_type": "type", "validated": true, "ani": 80.5664, "matched_fragments": 1531, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 80.4813, "matched_fragments": 1676, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium roseum", "strain": "strain=DSM 43021", "accession": "GCA_000024865.1", "taxid": 2001, "species_taxid": 2001, "relation_to_type": "type", "validated": true, "ani": 80.3705, "matched_fragments": 1661, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea glycinis", "strain": "strain=NEAU-BB2C19", "accession": "GCA_020215885.1", "taxid": 2047744, "species_taxid": 2047744, "relation_to_type": "type", "validated": true, "ani": 80.3247, "matched_fragments": 1601, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea ceibae", "strain": "strain=KCTC 39826", "accession": "GCA_019396325.1", "taxid": 1935170, "species_taxid": 1935170, "relation_to_type": "type", "validated": true, "ani": 80.2048, "matched_fragments": 1695, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora rosea subsp. aerata", "strain": "strain=NBRC 14624", "accession": "GCA_016863075.1", "taxid": 147065, "species_taxid": 58117, "relation_to_type": "type", "validated": true, "ani": 80.1707, "matched_fragments": 1334, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea africana", "strain": "strain=DSM 43748", "accession": "GCA_014873535.1", "taxid": 46171, "species_taxid": 46171, "relation_to_type": "type", "validated": true, "ani": 80.1566, "matched_fragments": 1598, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora rosea subsp. aerata", "strain": "strain=JCM 3076", "accession": "GCA_014647835.1", "taxid": 147065, "species_taxid": 58117, "relation_to_type": "type", "validated": true, "ani": 80.1242, "matched_fragments": 1325, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea montanisoli", "strain": "strain=SMC 257", "accession": "GCA_013363975.1", "taxid": 2741721, "species_taxid": 2741721, "relation_to_type": "type", "validated": true, "ani": 80.1153, "matched_fragments": 1700, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 80.0644, "matched_fragments": 1835, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium violaceochromogenes", "strain": "strain=JCM 3281", "accession": "GCA_014654615.1", "taxid": 46188, "species_taxid": 46188, "relation_to_type": "type", "validated": true, "ani": 80.052, "matched_fragments": 1126, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea dietziae", "strain": "strain=DSM 44320", "accession": "GCA_014195505.1", "taxid": 65515, "species_taxid": 65515, "relation_to_type": "type", "validated": true, "ani": 79.9942, "matched_fragments": 1647, "total_fragments": 3852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium rufum", 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