{ "type": "genome", "identifier": "GCF_014202435.1", "organism": "Pseudoxanthomonas broegbernensis", "title": "Pseudoxanthomonas broegbernensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014202435.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908519", "wgs_master": "JACHGU000000000.1", "refseq_category": "reference genome", "taxid": "83619", "species_taxid": "83619", "organism_name": "Pseudoxanthomonas broegbernensis", "infraspecific_name": "strain=DSM 12573", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420243v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014202435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/202/435/GCF_014202435.1_ASM1420243v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3472589", "genome_size_ungapped": "3472493", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014202435.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3063", "protein_coding_gene_count": "2957", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoxanthomonas broegbernensis" ], "sample_taxid": [ "83619" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.928 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3472589", "Number of Sequences": "32", "Longest Sequences (bp)": "806017", "N50 (bp)": "506806", "Gap Ratio (%)": "0.002765", "GCcontent (%)": "70.8", "Number of CDSs": "3005", "Average Protein Length": "341.1", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoxanthomonas broegbernensis", "strain": "strain=DSM 12573", "accession": "GCA_014202435.1", "taxid": 83619, 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"type", "validated": true, "ani": 86.8295, "matched_fragments": 705, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas kaohsiungensis", "strain": "strain=DSM 17583", "accession": "GCA_010211765.1", "taxid": 283923, "species_taxid": 283923, "relation_to_type": "type", "validated": true, "ani": 86.1879, "matched_fragments": 808, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas suwonensis", "strain": "strain=DSM 17175", "accession": "GCA_010093235.1", "taxid": 314722, "species_taxid": 314722, "relation_to_type": "suspected-type", "validated": true, "ani": 85.9663, "matched_fragments": 773, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas daejeonensis", "strain": "strain=DSM 17801", "accession": "GCA_010093205.1", "taxid": 266062, "species_taxid": 266062, "relation_to_type": "type", "validated": 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1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 81.9987, "matched_fragments": 574, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 81.9164, "matched_fragments": 519, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 81.6236, "matched_fragments": 640, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" } ], 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