{ "type": "genome", "identifier": "GCF_014202575.1", "organism": "Texcoconibacillus texcoconensis", "title": "Texcoconibacillus texcoconensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014202575.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908367", "wgs_master": "JACHHB000000000.1", "refseq_category": "reference genome", "taxid": "1095777", "species_taxid": "1095777", "organism_name": "Texcoconibacillus texcoconensis", "infraspecific_name": "strain=DSM 24696", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420257v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014202575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/202/575/GCF_014202575.1_ASM1420257v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3417124", "genome_size_ungapped": "3416457", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014202575.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3313", "protein_coding_gene_count": "3186", "non_coding_gene_count": "100", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Texcoconibacillus texcoconensis" ], "sample_taxid": [ "1095777" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.971 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3417124", "Number of Sequences": "38", "Longest Sequences (bp)": "434824", "N50 (bp)": "233278", "Gap Ratio (%)": "0.019519", "GCcontent (%)": "40.3", "Number of CDSs": "3262", "Average Protein Length": "293.3", "Coding Ratio (%)": "84.0", "Number of rRNAs": "4", "Number of tRNAs": "81", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Texcoconibacillus texcoconensis", "strain": "strain=DSM 24696", "accession": "GCA_014202575.1", "taxid": 1095777, 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"matched_fragments": 63, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014202575.1", "gtdb_species": "s__Texcoconibacillus texcoconensis", "ani": 100.0, "matched_fragments": 1117, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Salisediminibacteriaceae;g__Texcoconibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003226325.1", "gtdb_species": "s__Salipaludibacillus keqinensis", "ani": 77.1761, "matched_fragments": 52, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Salisediminibacteriaceae;g__Salipaludibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001866055.1", "gtdb_species": "s__Anaerobacillus alkalidiazotrophicus", "ani": 76.9814, "matched_fragments": 53, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Anaerobacillaceae;g__Anaerobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900111295.1", "gtdb_species": "s__Salipaludibacillus aurantiacus", "ani": 76.8448, "matched_fragments": 54, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Salisediminibacteriaceae;g__Salipaludibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002335745.1", "gtdb_species": "s__FJAT-44876 sp002335745", "ani": 76.8354, "matched_fragments": 82, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Salisediminibacteriaceae;g__FJAT-44876", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019042215.1", "gtdb_species": "s__Evansella tamaricis", "ani": 76.6484, "matched_fragments": 65, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Salisediminibacteriaceae;g__Evansella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002019795.1", "gtdb_species": "s__Bacillus_AO alkalicellulosilyticus", "ani": 76.6172, "matched_fragments": 53, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_F;g__Bacillus_AO", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007830185.1", "gtdb_species": "s__Bacillus_L nanhaiisediminis", "ani": 76.5104, "matched_fragments": 54, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000787375.1", "gtdb_species": "s__Bacillus_L okhensis", "ani": 76.4407, "matched_fragments": 54, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_D;g__Bacillus_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004116265.1", "gtdb_species": "s__Anaerobacillus alkaliphilus", "ani": 76.2071, "matched_fragments": 62, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Anaerobacillaceae;g__Anaerobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { 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