{
    "type": "genome",
    "identifier": "GCF_014202595.1",
    "organism": "Nosocomiicoccus ampullae",
    "title": "Nosocomiicoccus ampullae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014202595.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14908361",
        "wgs_master": "JACHHF000000000.1",
        "refseq_category": "na",
        "taxid": "489910",
        "species_taxid": "489910",
        "organism_name": "Nosocomiicoccus ampullae",
        "infraspecific_name": "strain=DSM 19163",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/14",
        "asm_name": "ASM1420259v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_014202595.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/202/595/GCF_014202595.1_ASM1420259v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1524904",
        "genome_size_ungapped": "1524708",
        "gc_percent": "34.500000",
        "replicon_count": "0",
        "scaffold_count": "17",
        "contig_count": "17",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014202595.1-RS_2024_09_26",
        "annotation_date": "2024-09-26",
        "total_gene_count": "1601",
        "protein_coding_gene_count": "1530",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-14",
    "dateModified": "2020-08-14",
    "datePublished": "2020-08-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nosocomiicoccus ampullae"
        ],
        "sample_taxid": [
            "489910"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.427 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1524904",
        "Number of Sequences": "17",
        "Longest Sequences (bp)": "262328",
        "N50 (bp)": "204517",
        "Gap Ratio (%)": "0.012853",
        "GCcontent (%)": "34.3",
        "Number of CDSs": "1545",
        "Average Protein Length": "298.9",
        "Coding Ratio (%)": "90.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Nosocomiicoccus ampullae",
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                "accession": "GCA_014202595.1",
                "taxid": 489910,
                "species_taxid": 489910,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 498,
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                "ani_threshold": 95,
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            },
            {
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                "species_taxid": 489910,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9984,
                "matched_fragments": 499,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nosocomiicoccus massiliensis",
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                "species_taxid": 1232430,
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                "validated": true,
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                "matched_fragments": 307,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus schoeneichii",
                "strain": "strain=CIP 111030",
                "accession": "GCA_903994025.1",
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                "species_taxid": 1812261,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4056,
                "matched_fragments": 128,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus schoeneichii",
                "strain": "strain=CCM 8667",
                "accession": "GCA_014635565.1",
                "taxid": 1812261,
                "species_taxid": 1812261,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3609,
                "matched_fragments": 130,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliicoccus persicus",
                "strain": "strain=IBRC-M10081",
                "accession": "GCA_900110815.1",
                "taxid": 930138,
                "species_taxid": 930138,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 51,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014202595.1",
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                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Nosocomiicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_019119225.1",
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                "matched_fragments": 393,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Nosocomiicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001696685.1",
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                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_000438455.1",
                "gtdb_species": "s__Nosocomiicoccus massiliensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Nosocomiicoccus",
                "ani_circumscription_radius": 95.642,
                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_014635565.1",
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                "ani": 78.3326,
                "matched_fragments": 131,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900110815.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Aliicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
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        "growth_tmp": 32.0,
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        "genome_size": 1509734.0,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Nosocomiicoccus",
        "ampullae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}