{ "type": "genome", "identifier": "GCF_014203125.1", "organism": "Rhodopseudomonas rhenobacensis", "title": "Rhodopseudomonas rhenobacensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014203125.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908538", "wgs_master": "JACHIH000000000.1", "refseq_category": "reference genome", "taxid": "87461", "species_taxid": "87461", "organism_name": "Rhodopseudomonas rhenobacensis", "infraspecific_name": "strain=DSM 12706", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420312v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014203125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/203/125/GCF_014203125.1_ASM1420312v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5177157", "genome_size_ungapped": "5176915", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "73", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014203125.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "4800", "protein_coding_gene_count": "4675", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodopseudomonas rhenobacensis" ], "sample_taxid": [ "87461" ], "sample_host_organism": [ "not 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{ "organism_name": "Bradyrhizobium shewense", "strain": "strain=ERR11", "accession": "GCA_900094605.1", "taxid": 1761772, "species_taxid": 1761772, "relation_to_type": "type", "validated": true, "ani": 80.6816, "matched_fragments": 902, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia birgiae", "strain": "strain=34632", "accession": "GCA_000308295.2", "taxid": 151414, "species_taxid": 151414, "relation_to_type": "type", "validated": true, "ani": 79.486, "matched_fragments": 674, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014203125.1", "gtdb_species": "s__Rhodopseudomonas rhenobacensis", "ani": 100.0, "matched_fragments": 1685, "total_fragments": 1691, "gtdb_taxonomy": 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