{ "type": "genome", "identifier": "GCF_014203325.1", "organism": "Saccharopolyspora gloriosae", "title": "Saccharopolyspora gloriosae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014203325.1", "bioproject": "PRJNA224116", "biosample": "SAMN05878036", "wgs_master": "JACHIV000000000.1", "refseq_category": "reference genome", "taxid": "455344", "species_taxid": "455344", "organism_name": "Saccharopolyspora gloriosae", "infraspecific_name": "strain=DSM 45582", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420332v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014203325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/203/325/GCF_014203325.1_ASM1420332v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6825909", "genome_size_ungapped": "6825909", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014203325.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5972", "protein_coding_gene_count": "5869", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharopolyspora gloriosae" ], "sample_taxid": [ "455344" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.813 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6825909", "Number of Sequences": "1", "Longest Sequences (bp)": "6825909", "N50 (bp)": "6825909", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.1", "Number of CDSs": "6026", "Average Protein Length": "326.7", "Coding Ratio (%)": "86.5", "Number of rRNAs": "12", "Number of tRNAs": "70", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharopolyspora gloriosae", "strain": "strain=DSM 45582", "accession": "GCA_014203325.1", "taxid": 455344, "species_taxid": 455344, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2274, "total_fragments": 2275, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Saccharopolyspora hordei", "strain": "strain=DSM 44065", "accession": "GCA_013410345.1", "taxid": 1838, "species_taxid": 1838, "relation_to_type": "type", "validated": true, "ani": 81.357, "matched_fragments": 1144, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=NRRL 2338", "accession": "GCA_000062885.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 81.3029, "matched_fragments": 1236, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora hirsuta", "strain": "strain=VKM Ac-666", "accession": "GCA_008630535.1", "taxid": 1837, "species_taxid": 1837, "relation_to_type": "type", "validated": true, "ani": 81.2433, "matched_fragments": 1228, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=DSM 40517", "accession": "GCA_002564065.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 81.2304, "matched_fragments": 1240, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=NRRL 2338", "accession": "GCA_000171635.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 81.1849, "matched_fragments": 1204, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora antimicrobica", "strain": "strain=DSM 45119", "accession": "GCA_003635025.1", "taxid": 455193, "species_taxid": 455193, "relation_to_type": "type", "validated": true, "ani": 81.1455, "matched_fragments": 1227, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora subtropica", "strain": "strain=CGMCC 4.7206", "accession": "GCA_014646075.1", "taxid": 1530170, "species_taxid": 1530170, "relation_to_type": "type", "validated": true, "ani": 81.1282, "matched_fragments": 1014, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora kobensis", "strain": "strain=ATCC 20501", "accession": "GCA_900108315.1", "taxid": 146035, "species_taxid": 146035, "relation_to_type": "type", "validated": true, "ani": 80.984, "matched_fragments": 1227, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora rhizosphaerae", "strain": "strain=H219", "accession": "GCA_003931915.1", "taxid": 2492662, "species_taxid": 2492662, "relation_to_type": "type", "validated": true, "ani": 80.9246, "matched_fragments": 1037, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora shandongensis", "strain": "strain=CGMCC 4.3530", "accession": "GCA_900106995.1", "taxid": 418495, "species_taxid": 418495, "relation_to_type": "type", "validated": true, "ani": 80.8852, "matched_fragments": 1240, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora elongata", "strain": "strain=7K502", "accession": "GCA_004348985.1", "taxid": 2530387, "species_taxid": 2530387, "relation_to_type": "type", "validated": true, "ani": 80.7457, "matched_fragments": 1245, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora spinosa", "strain": "strain=NRRL 18395", "accession": "GCA_000194155.1", "taxid": 60894, "species_taxid": 60894, "relation_to_type": "type", "validated": true, "ani": 80.6416, "matched_fragments": 1077, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora dendranthemae", "strain": 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