{ "type": "genome", "identifier": "GCF_014203355.1", "organism": "Kutzneria kofuensis", "title": "Kutzneria kofuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014203355.1", "bioproject": "PRJNA224116", "biosample": "SAMN05878009", "wgs_master": "JACHIR000000000.1", "refseq_category": "reference genome", "taxid": "103725", "species_taxid": "103725", "organism_name": "Kutzneria kofuensis", "infraspecific_name": "strain=DSM 43851", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/14", "asm_name": "ASM1420335v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_014203355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/203/355/GCF_014203355.1_ASM1420335v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10435448", "genome_size_ungapped": "10435448", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014203355.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "9337", "protein_coding_gene_count": "9181", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-14", "dateModified": "2020-08-14", "datePublished": "2020-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Kutzneria kofuensis" ], "sample_taxid": [ "103725" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.787 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10435448", "Number of Sequences": "5", "Longest Sequences (bp)": "8737631", "N50 (bp)": "8737631", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.5", "Number of CDSs": "9399", "Average Protein Length": "339.9", "Coding Ratio (%)": "91.8", "Number of rRNAs": "9", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kutzneria kofuensis", "strain": "strain=DSM 43851", "accession": "GCA_014203355.1", "taxid": 103725, "species_taxid": 103725, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3475, "total_fragments": 3477, "ani_threshold": 95, 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"Saccharothrix algeriensis", "strain": "strain=DSM 44581", "accession": "GCA_016907655.1", "taxid": 173560, "species_taxid": 173560, "relation_to_type": "type", "validated": true, "ani": 79.1003, "matched_fragments": 1072, "total_fragments": 3477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix variisporea", "strain": "strain=DSM 43911", "accession": "GCA_003634995.1", "taxid": 543527, "species_taxid": 543527, "relation_to_type": "type", "validated": true, "ani": 79.0311, "matched_fragments": 1249, "total_fragments": 3477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix saharensis", "strain": "strain=DSM 45456", "accession": "GCA_006716745.1", "taxid": 571190, "species_taxid": 571190, "relation_to_type": "type", "validated": true, "ani": 78.9161, "matched_fragments": 1262, "total_fragments": 3477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix espanaensis", "strain": "strain=type strain: DSM 44229", "accession": "GCA_000328705.1", "taxid": 103731, "species_taxid": 103731, "relation_to_type": "type", "validated": true, "ani": 78.8985, "matched_fragments": 1245, "total_fragments": 3477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix carnea", "strain": "strain=CGMCC 4.7097", "accession": "GCA_003014735.1", "taxid": 1280637, "species_taxid": 1280637, "relation_to_type": "type", "validated": true, "ani": 78.869, "matched_fragments": 1211, "total_fragments": 3477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptoalloteichus hindustanus", "strain": "strain=DSM 44523", "accession": "GCA_900129375.1", "taxid": 2017, "species_taxid": 2017, "relation_to_type": "type", "validated": true, "ani": 78.8678, "matched_fragments": 960, "total_fragments": 3477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix syringae", "strain": "strain=NRRL B-16468", 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