{
    "type": "genome",
    "identifier": "GCF_014203365.1",
    "organism": "Actinoalloteichus hymeniacidonis",
    "title": "Actinoalloteichus hymeniacidonis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014203365.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05878348",
        "wgs_master": "JACHIS000000000.1",
        "refseq_category": "na",
        "taxid": "340345",
        "species_taxid": "340345",
        "organism_name": "Actinoalloteichus hymeniacidonis",
        "infraspecific_name": "strain=DSM 45092",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/14",
        "asm_name": "ASM1420336v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_014203365.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/203/365/GCF_014203365.1_ASM1420336v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6306207",
        "genome_size_ungapped": "6306207",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014203365.1-RS_2024_09_26",
        "annotation_date": "2024-09-26",
        "total_gene_count": "5438",
        "protein_coding_gene_count": "5338",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-14",
    "dateModified": "2020-08-14",
    "datePublished": "2020-08-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinoalloteichus hymeniacidonis"
        ],
        "sample_taxid": [
            "340345"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.713 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6306207",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "6306207",
        "N50 (bp)": "6306207",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.1",
        "Number of CDSs": "5429",
        "Average Protein Length": "336.6",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "9",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "14"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Actinoalloteichus hymeniacidonis",
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                "accession": "GCA_014203365.1",
                "taxid": 340345,
                "species_taxid": 340345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2101,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinoalloteichus hymeniacidonis",
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                "accession": "GCA_001747425.1",
                "taxid": 340345,
                "species_taxid": 340345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9995,
                "matched_fragments": 2100,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinoalloteichus fjordicus",
                "strain": "strain=ADI127-7",
                "accession": "GCA_001941625.1",
                "taxid": 1612552,
                "species_taxid": 1612552,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1359,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoalloteichus hoggarensis",
                "strain": "strain=DSM 45943",
                "accession": "GCA_002234535.1",
                "taxid": 1470176,
                "species_taxid": 1470176,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8263,
                "matched_fragments": 1288,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoalloteichus hoggarensis",
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                "accession": "GCA_014203625.1",
                "taxid": 1470176,
                "species_taxid": 1470176,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8262,
                "matched_fragments": 1266,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crossiella cryophila",
                "strain": "strain=DSM 44230",
                "accession": "GCA_014204915.1",
                "taxid": 43355,
                "species_taxid": 43355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6455,
                "matched_fragments": 632,
                "total_fragments": 2102,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_001747425.1",
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                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinoalloteichus",
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                "mean_intra_species_ani": "100.00",
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                "min_intra_species_af": "1.00",
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                "status": "conclusive"
            },
            {
                "accession": "GCF_001941625.1",
                "gtdb_species": "s__Actinoalloteichus fjordicus",
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                "matched_fragments": 1357,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinoalloteichus",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.98",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002234535.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinoalloteichus",
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                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000239155.1",
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                "matched_fragments": 505,
                "total_fragments": 2102,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinoalloteichus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "matched_fragments": 566,
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                "num_clustered_genomes": 3,
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            },
            {
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                "gtdb_species": "s__Streptoalloteichus hindustanus",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Streptoalloteichus",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            {
                "accession": "GCF_014204915.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Crossiella",
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                "mean_intra_species_ani": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Gandjariella",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__AN110305",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Sphaerisporangium",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "hymeniacidonis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}